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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACATGCCTATTGTGGGAGCAATAGCTTTGCATGTTTCTCTTCTTACATTTACTCTCCGTGTTCATCCAGATCGACTTGATTATGTGGACCAAGTACTGgtatgttactttcaaacatcacaacctttttatgagatgtggtatggacatgaattgcattttagctaagctgcatcatttctggaatttgtacag

Basic information

species Glycine max
transcript GLYMA14G40270.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G40270.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os03g58700.1 (Oryza sativa), 5'ss of exon 11
TGACATGCCTATTGTGGGAGCAATAGCTTTGCATGTTTCTCTTCTTACATTTACTCTCCGTGTTCATCCAGATCGACTTGATTATGTGGACCAAGTACTGgtatgttactttc-----aaacatcacaacctttttatgagatgtggtatggacatgaattgcattttagctaagctgcatcatttctggaatttgtacag
|||||||||  |||| || ||| || ||||  |||| || ||| | ||||||||||||||||| ||||| ||||| ||||||||||| || |||||  ||||| |     ||          |  | || ||  | |    ||    ||||  |||| | |    | ||  | |  |  |   | ||   ||| |  | | 
TGACATGCCAGTTGTTGGTGCAGTAACTTTATATGTATCACTTTTGACATTTACTCTCCGTGTGCATCCGGATCGGCTTGATTATGTTGATCAAGTGTTGgtaagccttcttgtgtaggggaaaaaaaatctcctaactctatagtatatgtgcatgtaattt-ctgtactttatatatactttctccacaatctacaaat

upper sequence: GLYMA14G40270.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM5G844195_T02 (Zea mays), 5'ss of exon 12
TGACATGCCTATTGTGGGAGCAATAGCTTTGCATGTTTCTCTTCTTACATTTACTCTCCGTGTTCATCCAGATCGACTTGATTATGTGGACCAAGTACTGgtatgttactttcaaaca-tcacaacctttttatgagatgtggtatggacatgaattgcattttagctaagctgcatcat----ttctggaatttgta-cag-------------------------------------------------------------------------
|||||||||  |||| ||||| ||| || |  |||| || ||||| || |||||||||||||| ||||| ||||| ||||||||||| |||||||| |||||| ||    || |||||   | |   | | |      | |  ||||| | ||  |      | ||| ||||    |  |    | ||  ||||  || ||                                                                          
TGACATGCCAGTTGTTGGAGCCATAACTCTATATGTATCACTTCTGACCTTTACTCTCCGTGTACATCCTGATCGGCTTGATTATGTTGACCAAGTGCTGgtaagtcttctttaaacaactatatgatgtatgccccttctcttatggtc-tgtttgctgactcagc-aagccattttttgttgtgctataattgatagcaaggcaatgatgcaatccattagtggtagtacaatgtcaattgaatcttctaactcattatatttgcttggacag

upper sequence: GLYMA14G40270.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM5G825524_T02 (Zea mays), 5'ss of exon 11
TGACATGCCTATTGTGGGAGCAATAGCTTTGCATGTTTCTCTTCTTACATTTACTCTCCGTGTTCATCCAGATCGACTTGATTATGTGGACCAAGTACTGgtatgttactttcaaaca-tcacaacctttttatgagatgtggtatggacatgaattgcattttagctaagctgcatcatttctg----gaatttgtacag------------------------------------------------------------------
|||||||||  |||| |||||  || || |  |||| || ||||| || |||||||||||||| ||||| || || ||||||||||| |||||||| || ||| ||    || ||||| | | |   ||| |      |||  |   |||   |   |   |||   |  | || |  ||   ||    ||| ||    ||                                                                  
TGACATGCCAGTTGTTGGAGCCGTAACTCTATATGTATCGCTTCTGACTTTTACTCTCCGTGTACATCCTGACCGGCTTGATTATGTTGACCAAGTGCTCgtaagtcttctttaaacaattatatggtttatgccgtctgtt-tgctgactcaagaagtcatttttttttgttgtactataattgataggaacttaggaaggcagtgatgtaatccactaatggtctaatgttaattcaatctaactcgttatatttgtctggacag

upper sequence: GLYMA14G40270.1 (Glycine max), 5'ss of exon 11
lower sequence: AT1G75850.1 (Arabidopsis thaliana), 5'ss of exon 11
TGACATGCCTATTGTGGGAGCAATAGCTTTGCATGTTTCTCTTCTTACATTTACTCTCCGTGTTCATCCAGATCGACTTGATTATGTGGACCAAGTACTGgtatg-ttactttcaaacatcacaaccttttta------tgagatgtggtatggacatgaattgcattttag-ctaagctgcat---catttctggaattt----gtacag----------------------------------------------------------------------------------------
||| ||||||||||| ||||| ||  || ||  ||| |||||| | || ||||||||||| |||||||| ||||| ||||| |||||||| |||||| ||||||| || | ||       || |   ||| ||      |     ||  | |     |   ||| || |  | |||  ||  ||   ||  |   || |||    ||| ||                                                                                        
TGAGATGCCTATTGTCGGAGCTATGACTCTGTTTGTCTCTCTTTTGACTTTTACTCTCCGAGTTCATCCTGATCGGCTTGACTATGTGGATCAAGTATTGgtatggtttcctttcgttgccatatgttttctaaacttttagtcagtattgtctctgtagcttgtatctctgtctacactatatgttcagattcagattttcattgtaaaggtgtaaaatgcatttttaaagttttatgattacttgaatctggtgtagccctggcgttaaactaattattgatccgaaaactttgtag

upper sequence: GLYMA14G40270.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv18s0001g14680.t01 (Vitis vinifera), 5'ss of exon 11
TGACATGCCTATTGTGGGAGCAATAGCTTTGCATGTTTCTCTTCTTACATTTACTCTCCGTGTTCATCCAGATCGACTTGATTATGTGGACCAAGTACTGgtatgttactttcaaacatcacaacctttttatgagatgtggtatggacatgaatt-gcattttagctaagctgcatcatttctggaatttgtacag-------
|||||||||| || | ||||||||| ||||  |||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||||| |||||||||||||||      |||  ||   ||  |  |  | |       | || |||||  || ||     |     | | ||  || | |  ||||| |   |       
TGACATGCCTGTTTTTGGAGCAATAACTTTATATGTCTCTCTTCTTACATTTACTCTTCGTGTTCATCCTGATCGGCTTGATTATGTGGATCAAGTACTGgtatgtc---cccaattatacaaagttcatgcttatgatccatttgcacatggttttgctaacgaatgctgatacacgatctataaaattt-tctggctgctgc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7326466|gb|AW620275.1|AW620275
EST:     TTACTCTCCGTGTTCATCCAGATCGACTTGATTATGTGGACCAAGTACTG                         GGATCATGTGTCAAGAAGCTTTATGGAAAACCAAAGCTTGATGACAATAGA
genomic: TTACTCTCCGTGTTCATCCAGATCGACTTGATTATGTGGACCAAGTACTGgtatgttact ... atttgtacagGGATCATGTGTCAAGAAGCTTTATGGAAAACCAAAGCTTGATGACAATAGA