1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAGgtaaaactttagtttataatgaactttccccctcttttgcaaaaacttcatttgggttatcataatggtgagtgatgttcttatccgcatag
species | Glycine max |
transcript | GLYMA14G36540.3 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: AGGAAGGAATCAGTGCTGAG TTCATTAATTTGCGTTCAATCCGGCCGCTTTGATCGATCCACAATCAATGCEST: gi|254335255|gb|GR846752.1|GR846752
genomic: AGGAAGGAATCAGTGCTGAGgtaaaacttt ... atccgcatagGTCATTAATTTGCGTTCAATCCGGCCGC-TTGATCGATCCACAATCAATGC
EST: GCTGCCTGAGACACTGGCAAAGGGAAGGAATCAGTGCTGAG GTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCTEST: gi|20498733|gb|BQ273663.1|BQ273663
genomic: GCTG-CTGAGACACTGGCAAA-GGAAGGAATCAGTGCTGAGgtaaaacttt ... atccgcatagGTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCT
EST: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAG GTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCTEST: gi|254319589|gb|GR829101.1|GR829101
genomic: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAGgtaaaacttt ... atccgcatagGTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCT
EST: GCTGCTGAGACACTGGCAAAGG-AGGGATCAGTGCTGAG GTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCTEST: gi|20498857|gb|BQ273787.1|BQ273787
genomic: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAGgtaaaacttt ... atccgcatagGTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCT
EST: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAG GTCATTAATTTGCGTTCAATCCGACCGCTTGATCGGTCCACAATEST: gi|19053203|gb|BM731870.1|BM731870
genomic: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAGgtaaaacttt ... atccgcatagGTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAAT
EST: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAG GTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCTEST: gi|9439950|gb|BE440462.1|BE440462
genomic: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAGgtaaaacttt ... atccgcatagGTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCT
EST: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAG GTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCTEST: gi|37994649|gb|CF806308.1|CF806308
genomic: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAGgtaaaacttt ... atccgcatagGTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCT
EST: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAG GTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCTEST: gi|298169681|gb|HO021041.1|HO021041
genomic: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAGgtaaaacttt ... atccgcatagGTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCT
EST: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAG GTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCTEST: gi|17962851|gb|BM269607.1|BM269607
genomic: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAGgtaaaacttt ... atccgcatagGTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCT
EST: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAG GTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCTEST: gi|5606648|gb|AI900746.1|AI900746
genomic: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAGgtaaaacttt ... atccgcatagGTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCT
EST: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAG GTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCTEST: gi|254334369|gb|GR844154.1|GR844154
genomic: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAGgtaaaacttt ... atccgcatagGTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCT
EST: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAG GTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCTEST: gi|254335254|gb|GR846751.1|GR846751
genomic: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAGgtaaaacttt ... atccgcatagGTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCT
EST: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAG -TCATTAATTTGCGGTCAATCCGGC-GCTTGATCGATCCACAATCAATGCTEST: gi|11412033|gb|BF424044.1|BF424044
genomic: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAGgtaaaacttt ... atccgcatagGTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCT
EST: GCTGCTGAGACACT-GCAAAAGGAA-GAATCAGNTGCTGAG GTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCEST: gi|10845821|gb|BF068863.1|BF068863
genomic: GCTGCTGAGACACTGGC-AAAGGAAGGAATCAG-TGCTGAGgtaaaacttt ... atccgcatagGTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGC
EST: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAG GTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCTEST: gi|9565969|gb|BE475478.1|BE475478
genomic: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAGgtaaaacttt ... atccgcatagGTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCT
EST: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAG GTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCTEST: gi|151397384|gb|EV267257.1|EV267257
genomic: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAGgtaaaacttt ... atccgcatagGTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCT
EST: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAG GTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCTEST: gi|6848027|gb|AW350317.1|AW350317
genomic: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAGgtaaaacttt ... atccgcatagGTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCT
EST: GCTGCTGAGACACTNNCAAANNNAGGAATCAGTGCTGAG GTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCT
genomic: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAGgtaaaacttt ... atccgcatagGTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAGgtaaaactttagtttataatgaactttccccctcttttgcaaaaacttcatttgggttatcataatggtgagtgatgttcttatccgcatag
- - - - - - - GCAAAG
- - - - - - - - - AAGGAA
- - - - - - - - - - - AAGGAA