1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ACATATGCCTATGATGATACATCATTGGGATCATGGATGATGGGCGTCCAAGCAACTTACATAGATGACAGTCGGCTTTGCTGCAGTAGTATCAGACAAGgtgaaatcccagttcttatgttttgcagtggttgttttcttgcagttataatgttcaatataacttttctcattacctgtgcccattttcag
species | Glycine max |
transcript | GLYMA14G14000.2 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: AGCAACTTACATAGATGACAGTCGGCTTTGCTGCAGTAGTATCAGACAAG ACAAGGTATGCTCCTTGGCTTGATTGGAGGATCACAAGCACATTCTTCCCTEST: gi|27424174|gb|CA935694.1|CA935694
genomic: AGCAACTTACATAGATGACAGTCGGCTTTGCTGCAGTAGTATCAGACAAGgtgaaatccc ... ccattttcagACAAGGTATGCTCCTTGGCTTGATTGGAGGATCACAAGCACATTCTTCCCT
EST: AGCAACTTACATAGATGACAGTCGGCTTTGCTGCAGTAGTATCAGACAAG ACAAGGTATGCTCCTTGGCTTGATTGGAGGATCACAAGCACATTCTTCCCTEST: gi|208103300|gb|GD901178.1|GD901178
genomic: AGCAACTTACATAGATGACAGTCGGCTTTGCTGCAGTAGTATCAGACAAGgtgaaatccc ... ccattttcagACAAGGTATGCTCCTTGGCTTGATTGGAGGATCACAAGCACATTCTTCCCT
EST: AGCAACTTACATAGATGACAGTCGGCTTTGCTGCAGTAGTATCAGACAAG ACAAGGTATGCTCCTTGGCTTGATTGGAGGATCACAAGCACATTCTTCCCTEST: gi|31476284|gb|CD418312.1|CD418312
genomic: AGCAACTTACATAGATGACAGTCGGCTTTGCTGCAGTAGTATCAGACAAGgtgaaatccc ... ccattttcagACAAGGTATGCTCCTTGGCTTGATTGGAGGATCACAAGCACATTCTTCCCT
EST: AGCAACTTACATAGATGACAGTCGGCTTTGCTGCAGTAGTATCAGACAAG ACAAGGTATGCTCCTTGGCTTGATTGGAGGATCACAAGCACATTCTTCCCT
genomic: AGCAACTTACATAGATGACAGTCGGCTTTGCTGCAGTAGTATCAGACAAGgtgaaatccc ... ccattttcagACAAGGTATGCTCCTTGGCTTGATTGGAGGATCACAAGCACATTCTTCCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACATATGCCTATGATGATACATCATTGGGATCATGGATGATGGGCGTCCAAGCAACTTACATAGATGACAGTCGGCTTTGCTGCAGTAGTATCAGACAAGgtgaaatcccagttcttatgttttgcagtggttgttttcttgcagttataatgttcaatataacttttctcattacctgtgcccattttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG