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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCGTTGCAAGGCAATAAACTCTCTGGACATATTCCATCAGTGATCGGTCTCATGCAAGCACTTGCTGTCCTgtaagcattgtgtgttactaatttctgaattatttttttttttgtgaaatttggtcattgacttgatgttttctccctaatgctcttttaatattgattttattccaaatttccaatccag

Basic information

species Glycine max
transcript GLYMA14G11220.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G11220.1 (Glycine max), 5'ss of exon 11
lower sequence: AT2G26330.1 (Arabidopsis thaliana), 5'ss of exon 11
GTCGTTGCAAGGCAATAAACTCTCTGGACATATTCCATCAGTGATCGGTCTCATGCAAGCACTTGCTGTCCTgtaagcattgtgtgttactaatttctgaa-ttatttttt---tttttgtgaaatttggtcattgacttgatgttttctccctaatgctcttttaatattgattttattccaaatttccaatccag
 || |||||||||||| ||||||||||  | |||||||||||||| |||||||||||||| ||||| ||| |||||| | | |   |  |||||   ||||  || || |    ||||  |||| || ||| ||       |||||||||     |                                         
ATCATTGCAAGGCAATCAACTCTCTGGGAAGATTCCATCAGTGATTGGTCTCATGCAAGCCCTTGCAGTCTTgtaagtacttttctt--ctaatcaatgaagctacttataacattttcatgaacttaggttat-------atgttttcttttacag----------------------------------------

upper sequence: GLYMA14G11220.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv04s0008g01970.t01 (Vitis vinifera), 5'ss of exon 11
GTCGTTGCAAGGCAATAAACTCTCTGGACATATTCCATCAGTGATCGGTCTCATGCAAGCACTTGCTGTCCTgtaagcattgtgtgttactaatttctgaattatttttttttttgtgaaatttggtcattgacttgatgttttctccctaatgctcttttaatattgattttattccaaatttccaatccag
 || |||||||| ||  | || || || || || ||||||||||| ||||||||||| || ||||||||| ||||||  || |      | ||   || |||    || || |  ||||  |    || ||   |  || | | |      |||   || |    || ||||  ||  |  | |   | ||||
ATCCTTGCAAGGTAACCAGCTTTCAGGGCAAATCCCATCAGTGATTGGTCTCATGCAGGCTCTTGCTGTCTTgtaag--ttat------ccaaaagcttaatgtgcttattctaagtgatgtccattctttctttctatatatac------atgtatttctgt--ttcatttatttttacttgttttacccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193723857|gb|FK661793.1|FK661793
EST:     TCTGGACATATTCCATCAGTGATCGGTCTCATGCGAGCACTTGCTGTCCT                         AGACTTGAGCTGTAACATGTTAAGTGGACCAATTCCTCCTATCTTGGG
genomic: TCTGGACATATTCCATCAGTGATCGGTCTCATGCAAGCACTTGCTGTCCTgtaagcattg ... tccaatccagAGACTTGAGCTGTAACATGTTAAGTGGACCAATTCCTCCTATCTTGGG