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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTAAGGGAATGAATTACTTGCACACGAGCCATCCTCCCATTGTCCACCGAGATTTAAAGTCTCCAAATCTTCTTGTTGACAGGCATTGGGTTGTTAAGgtattctacttgaagtctttgtcttgggagtttaattcacaatgttgaaaataaaaggaatatcaattgattgcttgaagagagaaataaaaccattgag...

Basic information

species Glycine max
transcript GLYMA14G10790.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G10790.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv04s0008g01310.t01 (Vitis vinifera), 5'ss of exon 10
GCTAAGGGAATGAATTACTTGCACACGAGCCATCCTCCCATTGTCCACCGAGATTTAAAGTCTCCAAATCTTCTTGTTGACAGGCATTGGGTTGTTAAGgt--attctacttgaagtctttgtcttgggagtttaattcacaatgttgaaaataaaaggaatatcaattgattgcttgaagagagaaataaaaccattgag
|| ||||||||||||||||||||||| ||||||||| | ||||| ||  ||||| | || ||||||||||| |||||||| |   | ||||||||||||||    || |    |  |       |  ||  |||  |        ||||  ||  |     | |  | | | || || |  | | || || |         
GCCAAGGGAATGAATTACTTGCACACAAGCCATCCTACTATTGTACATAGAGATCTGAAATCTCCAAATCTCCTTGTTGATAAAAACTGGGTTGTTAAGgttcgctcaaaccaacataccaaaatatggcatttgctgtgttcc-ttgattattcagtatttttgtagttactggttcattaaaaaagtagataggacag-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193677298|gb|FK620520.1|FK620520
EST:     GAGATTTAAAGTCTCCAAATCTTCTTGTTGACAGGCATTGGGTTGTTAAG                         GTCTGTGATTTTGG
genomic: GAGATTTAAAGTCTCCAAATCTTCTTGTTGACAGGCATTGGGTTGTTAAGgtattctact ... cttttcacagGTCTGTGATTTTGG