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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAAATGTTGGCCTACTTGGTCTGACACACATAGGGAGCCGAAGAGTAGTGCAAATATCATGTGGTTTTATGATCTTCTTCTCTATTTTTGgtactatattccacctgaaacacgtgggtagactttccttccagtttttacattcctggtgtaattatttctgtttctttcag

Basic information

species Glycine max
transcript GLYMA14G08690.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G08690.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv18s0001g11260.t01 (Vitis vinifera), 5'ss of exon 11
TGAAAATGTTGGCCTACTTGGTCTGACACACATAGGGAGCCGAAGAGTAGTGCAAATATCATGTGGTTTTATGATCTTCTTCTCTATTTTTGgtac-----------tatattccacctgaaacacgtgggtagactttccttccagtttttac---attcctggtgtaattatttctgtttctttcag
||||||||| ||||| ||||| || ||||||||||||||| |||| || ||||| ||||||  || ||| ||| |||||||||| || ||||||             | || | | ||    |    |    |  | || | |    || | ||   ||   || |  | ||||  |||  ||||||||
TGAAAATGTGGGCCTCCTTGGACTCACACACATAGGGAGCAGAAGGGTGGTGCAGATATCAACTGCTTTCATGTTCTTCTTCTCCATATTTGgtctgttttttgttttttacttcccccattaattctattaaatcattgcctgggattatcactgaatgtttgattgagttatc-ctgcatctttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8283233|gb|BE020794.1|BE020794
EST:     AAGAGTAGTGCAAATATCATGTGGTTTTATGATCTTCTTCTCTATTTTTG                         GGAAATTTGGAGCCTTTTTTGCATCGATTCCCCTACCGATATTTGCTGCCA
genomic: AAGAGTAGTGCAAATATCATGTGGTTTTATGATCTTCTTCTCTATTTTTGgtactatatt ... tttctttcagGGAAATTTGGAGCCTTTTTTGCATCGATTCCCCTACCGATATTTGCTGCCA
EST: gi|10845512|gb|BF068621.1|BF068621
EST:     AAGAGTAGTGCAAATATCATGTGGTTTTATGATCTTCTTCTCTATTTTTG                         GGAAATTTGGAGCCTTTTTTGCATCGATTCCCCTACCGATATTTGCTGCCA
genomic: AAGAGTAGTGCAAATATCATGTGGTTTTATGATCTTCTTCTCTATTTTTGgtactatatt ... tttctttcagGGAAATTTGGAGCCTTTTTTGCATCGATTCCCCTACCGATATTTGCTGCCA
EST: gi|16345404|gb|BI970999.1|BI970999
EST:     AAGAGTAGTGCAAATATCATGTGGTNNNATGATCTTCTTCTCTATTNNNG                         GGAAATTTGGAGCCTTTTTTGCATCGATTCCCCTACCGATATTTGCTGCCA
genomic: AAGAGTAGTGCAAATATCATGTGGTTTTATGATCTTCTTCTCTATTTTTGgtactatatt ... tttctttcagGGAAATTTGGAGCCTTTTTTGCATCGATTCCCCTACCGATATTTGCTGCCA