Sequence
atgc intronic sequence ATGC exonic sequenceGAAGGCTGTTTCATATGTGAAATTTCTGTCTAATGATGAACTTGCTTCTGCATCAACAGATAGTACACTGCGATTATGGGATGTGAAGGAAAACTTACCAgtgagtaatatgagcaaaatgatttcttgctattgattggttaactataaccaatctgcctgctagaagtcatgtgcttaccaataattttatactgaaa...
Basic information
species | Glycine max |
transcript | GLYMA14G05430.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G05430.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os02g53140.1 (Oryza sativa), 5'ss of exon 11
GAAGGCTGTTTCATATGTGAAATTTCTGTCTAATGATGAACTTGCTTCTGCATCAACAGATAGTACACTGCGATTATGGGATGTGAAGGAAAACTTACCAgtgagtaatatgagcaaaatgatttc-ttgctattgattggtta-actataaccaatctgcctgctagaagtcatgtgcttaccaataattttatactgaaa
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GAAAGCTGTTTCTTATGTGAAGTTCCTGTCCACCAATGAGCTTGCGTCTGCATCAACTGATAGCACATTACGGTTATGGGATGTCAAAGAAAATTGCCCTgtatgtgtcattgagatttttcttgcactgcaattatgaaattatgtttttgccttttaagcagctatgacttat-tagtaaaaagtgatgttttaggata-
upper sequence: GLYMA14G05430.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G104920_T03 (Zea mays), 5'ss of exon 11
GAAGGCTGTTTCATATGTGAAATTTCTGTCTAATGATGAACTTGCTTCTGCATCAACAGATAGTACACTGCGATTATGGGATGTGAAGGAAAACTTACCAgtgagtaatatgagcaaaatgatttcttgctattgat-tggttaactata-accaatctgcctgctagaagtcatgtgcttaccaataattttatactgaaa
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GAAAGCAGTATCATATGTGAAATTCTTATCTAACAATGAGCTTGCGTCTGCATCAACAGATAGCACATTACGCTTATGGGATGTCAAGGATAACTGCCCGgtatgctctttctgtgatagtgtgtgtatatatatatatatatatatatatatatatatatatgccattcttcctctgg--agcttttgttgcaaaggaaag
upper sequence: GLYMA14G05430.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv12s0059g01420.t01 (Vitis vinifera), 5'ss of exon 11
GAAGGCTGTTTCATATGTGAAATTTCTGTCTAATGATGAACTTGCTTCTGCATCAACAGATAGTACACTGCGATTATGGGATGTGAAGGAAAACTTACCAgtgagtaatatgagcaaaatgatttcttgctattgattggttaactataaccaatctgcctgctagaagtcatgtgcttaccaataattttatactgaaa----
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GAAAGCTGTTTCATATGTGAAATTCTTGTCAAACAATGAGCTCGCTTCTGCTTCTACAGACAGCACATTGAGGTTGTGGGATGTGAAGGAAAATTTGCCAgtaagtaaagtctagatatagttttttggtttcttctta--caattatggcttttaaccacattatgctttcataactta--ggtttcctaagaatgagaagtcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|22524553|gb|BU083364.1|BU083364EST: CATCAACAGATAGTACACTGCGATTATGGGATGTGAAGGAAAACTTGCCA GTTCGTACTTTCAAAGGCCATGCAAATGAGAAAAACTTTGTTGGCCTTACA
genomic: CATCAACAGATAGTACACTGCGATTATGGGATGTGAAGGAAAACTTACCAgtgagtaata ... atgtgtacagGTTCGTACTTTCAAAGGCCATGCAAATGAGAAAAACTTTGTTGGCCTTACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAAGGCTGTTTCATATGTGAAATTTCTGTCTAATGATGAACTTGCTTCTGCATCAACAGATAGTACACTGCGATTATGGGATGTGAAGGAAAACTTACCAgtgagtaatatgagcaaaatgatttcttgctattgattggttaactataaccaatctgcctgctagaagtcatgtgcttaccaataattttatactgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA