Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATCTGGCCAAATATCTGTCACTGACTATGTCAGGATAACAAGCACTGAATGgtatatattcagttaatcaaagtgcaaattagcttctagttcttatggaaataaaaaagctttttggtaaagatgccaaaagtattactgatgttttttatttctacaatcatttcag

Basic information

species Glycine max
transcript GLYMA14G04030.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G04030.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv06s0009g02790.t01 (Vitis vinifera), 5'ss of exon 11
GAATCTGGCCAAATATCTGTCACTGACTATGTCAGGATAACAAGCACTGAATGgtatatattca----gttaatcaaagtgcaaattagctt--ctagttcttatggaaataaaaaagcttt-----------ttggtaaagatgccaaaa-gtattactga-tgttttttatttctaca--atcatttcag
|| ||||||||||| || |||||||| |||||| |||||||||||||||||||||||   ||||    | | ||  | ||  |  ||  ||   ||      | |  ||   |    | |||           |  ||  |  |  ||||   |||     | ||  ||| | || ||||  ||  ||||||
GAGTCTGGCCAAATCTCAGTCACTGATTATGTCCGGATAACAAGCACTGAATGgtatgctttcaaagtgatcatttatgtagaggttccctaaactgaaaaatgtataagatagtgtgttttacaatttaatctcagtttacctatcaaaccatatggaaaagtgagtttaacttttacattattttttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12773716|gb|BG238643.1|BG238643
EST:     TCT-GCCAAATATCTGTCACTGACTATGTCAGGATAACAAGCACTGAATG                         TGCTAAAATCTTCAATATATATCCAAGGAAAGGAGCTGTTCTCCCAGGATC
genomic: TCTGGCCAAATATCTGTCACTGACTATGTCAGGATAACAAGCACTGAATGgtatatattc ... atcatttcagTGCTAAAATCTTCAATATATATCCAAGGAAAGGAGCTGTTCTCCCAGGATC
EST: gi|8826144|gb|BE209804.1|BE209804
EST:     TCTGGCCAAATATCTGTCACTGACTATGTCAGGATAACAAGCACTGAATG                         TGCTAAAATCTTCAATATATATCCAAGGAAAGGAGCTGTTCTCCCAGGATC
genomic: TCTGGCCAAATATCTGTCACTGACTATGTCAGGATAACAAGCACTGAATGgtatatattc ... atcatttcagTGCTAAAATCTTCAATATATATCCAAGGAAAGGAGCTGTTCTCCCAGGATC
EST: gi|14989991|gb|BI315664.1|BI315664
EST:     TCTGGCCAAATATCTGTCACTGACTATGTCAGGATAACAAGCACTGAATG                         TGCTAAAATCTTCAATATATATCCAAGGAAAGGAGCTGTTCTCCCAGGATC
genomic: TCTGGCCAAATATCTGTCACTGACTATGTCAGGATAACAAGCACTGAATGgtatatattc ... atcatttcagTGCTAAAATCTTCAATATATATCCAAGGAAAGGAGCTGTTCTCCCAGGATC