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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTGTGAACGAATTTCTTGAGCATCAGAAGGAAAATATAACAAATTTGATAAAACAGAGTCTGGCAGTTGGTGATATATATAGGCGTGAAAATCTGCAGgtagcatgtttgattaagatacatttccattataaatatttgctcacgtaacgctgacaacaaaatctttccccttgtcaaaagattacaagtgtattag...

Basic information

species Glycine max
transcript GLYMA14G02220.2
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192301996|gb|FG995166.1|FG995166
EST:     TAAAACAGAGTCTGGCAGTTGGTGATATATATAGGCGTGAAAATCTGCAG                         TTTGCTACTGAGGACCTTGTCAAAGAGGTTGAGAATTCCATTGCTGAATTC
genomic: TAAAACAGAGTCTGGCAGTTGGTGATATATATAGGCGTGAAAATCTGCAGgtagcatgtt ... tgttttgtagTTTGCTACTGAGGACCTTGTCAAAGAGGTTGAGAATTCCATTGCTGAATTC
EST: gi|31457278|gb|CD399306.1|CD399306
EST:     TAAAACAGAGTCTGGCAGTTGGTGATATATATAGGCGTGAAAATCTGCAG                         TTTGCTACTGAGGACCTTGTCAAAGAGGTTGAGAATTCCATTGCTGAATTC
genomic: TAAAACAGAGTCTGGCAGTTGGTGATATATATAGGCGTGAAAATCTGCAGgtagcatgtt ... tgttttgtagTTTGCTACTGAGGACCTTGTCAAAGAGGTTGAGAATTCCATTGCTGAATTC
EST: gi|31466922|gb|CD408950.1|CD408950
EST:     TAAAACAGAGTCTGGCAGTTGGTGATATATATAGGCGTGAAAATCTGCAG                         TTTGCTACTGAGGACCTTGTCAAAGAGGTTGAGAATTCCATTGCTGAATTC
genomic: TAAAACAGAGTCTGGCAGTTGGTGATATATATAGGCGTGAAAATCTGCAGgtagcatgtt ... tgttttgtagTTTGCTACTGAGGACCTTGTCAAAGAGGTTGAGAATTCCATTGCTGAATTC
EST: gi|209705501|gb|BW673522.1|BW673522
EST:     TAAAACAGAGTCTGGCAGTTGGTGATATATATAGGCGTGAAAATCTGCAG                         TTTGCTACTGAGGACCTTGTCAAAGAGGTTGAGAATTCCATTGCTGAATTC
genomic: TAAAACAGAGTCTGGCAGTTGGTGATATATATAGGCGTGAAAATCTGCAGgtagcatgtt ... tgttttgtagTTTGCTACTGAGGACCTTGTCAAAGAGGTTGAGAATTCCATTGCTGAATTC
EST: gi|151410964|gb|EV280779.1|EV280779
EST:     TAAAACAGAGTCTGGCAGTTGGTGATATATATAGGCGTGAAAATCTGCAG                         TTTGCTACTGGGGACCTTGTCAAAGAGGTTGAGAATTCCATTGCTGAATTC
genomic: TAAAACAGAGTCTGGCAGTTGGTGATATATATAGGCGTGAAAATCTGCAGgtagcatgtt ... tgttttgtagTTTGCTACTGAGGACCTTGTCAAAGAGGTTGAGAATTCCATTGCTGAATTC
EST: gi|31456589|gb|CD398617.1|CD398617
EST:     TAAAACAGAGTCTGGCAGTTGGTGATATATATAGGCGTGAAAATCTGCAG                         TTTGCTACTGAGGACCTTGTCAAAGAGGTTGAGAATTCCATTGCTGAATTC
genomic: TAAAACAGAGTCTGGCAGTTGGTGATATATATAGGCGTGAAAATCTGCAGgtagcatgtt ... tgttttgtagTTTGCTACTGAGGACCTTGTCAAAGAGGTTGAGAATTCCATTGCTGAATTC
EST: gi|12773062|gb|BG237989.1|BG237989
EST:     TAAAACAGAGTCTGGCAGTTGGTGATATATATAGGCGTGAAAATCTGCAG                         TTTGCTACTGAGGACCTTGTCAAAGAGGTTGAGAATTCCATTGCTGAATTC
genomic: TAAAACAGAGTCTGGCAGTTGGTGATATATATAGGCGTGAAAATCTGCAGgtagcatgtt ... tgttttgtagTTTGCTACTGAGGACCTTGTCAAAGAGGTTGAGAATTCCATTGCTGAATTC
EST: gi|7028072|gb|AW457855.1|AW457855
EST:     TAAAACAGAGTCTGGCAGTTGGTGATATATATAGGCGTGAAAATCTGCAG                         TTTGCTACTGAGGACCTTGTCAAAGAGGTTGAGAATTCCATTGCTGAATTC
genomic: TAAAACAGAGTCTGGCAGTTGGTGATATATATAGGCGTGAAAATCTGCAGgtagcatgtt ... tgttttgtagTTTGCTACTGAGGACCTTGTCAAAGAGGTTGAGAATTCCATTGCTGAATTC
EST: gi|31306949|gb|CD392152.1|CD392152
EST:     TAAAACAGAGTCTGGCAGTTGGTGATATATATAGGCGTGAAAATCTGCAG                         TTTGCTACTGAGGACCTTGTCAAAGAGGTTGAGAATTCCATTGCTGAATTC
genomic: TAAAACAGAGTCTGGCAGTTGGTGATATATATAGGCGTGAAAATCTGCAGgtagcatgtt ... tgttttgtagTTTGCTACTGAGGACCTTGTCAAAGAGGTTGAGAATTCCATTGCTGAATTC
EST: gi|10253204|gb|BE820970.1|BE820970
EST:     TAAAACAGAGTCTGGCAGTTGGTGATATATATAGGCGTGAAAATCTGCAG                         TTTGCTACTGAGGACCTTGTCAAAGAGGTTGAGAATTCCATTGCTGAATTC
genomic: TAAAACAGAGTCTGGCAGTTGGTGATATATATAGGCGTGAAAATCTGCAGgtagcatgtt ... tgttttgtagTTTGCTACTGAGGACCTTGTCAAAGAGGTTGAGAATTCCATTGCTGAATTC
EST: gi|22541024|gb|BU090867.1|BU090867
EST:     TAAAACAGAGTCTGGCAGTTGGTGATATATATAGGCGTGAAAATCTGCAG                         TTTGCTACTGAGGACCTTGTCAAAGAGGTTGAGAATTCCATT
genomic: TAAAACAGAGTCTGGCAGTTGGTGATATATATAGGCGTGAAAATCTGCAGgtagcatgtt ... tgttttgtagTTTGCTACTGAGGACCTTGTCAAAGAGGTTGAGAATTCCATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCTGTGAACGAATTTCTTGAGCATCAGAAGGAAAATATAACAAATTTGATAAAACAGAGTCTGGCAGTTGGTGATATATATAGGCGTGAAAATCTGCAGgtagcatgtttgattaagatacatttccattataaatatttgctcacgtaacgctgacaacaaaatctttccccttgtcaaaagattacaagtgtattag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttcccc