1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GGTTGGAGGCATTGCAGCATCTTCTGTTCCTGGTTTATCTCCAAGTTCATCAGTTTGTTCACTGTCTTCTGAAAAATCAACTCTGAATCCCAATGCAAAGgtgtgaaagttcaagattgactttttgaaaaaggaatatttttcactagctgattctgatattttatattaccgacatatgtcggagtttcccccctttcatgttataag
species | Glycine max |
transcript | GLYMA13G42230.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CAGTTTGTTCACTGTCTTCTGAAAAATCAACTCTGAATCCCAATGCAAAG GAATTCAAGCTTAACCCTAATGCAAAGAGTTTTATTCCATCGCCTGCTCGGEST: gi|22930642|gb|BU547789.1|BU547789
genomic: CAGTTTGTTCACTGTCTTCTGAAAAATCAACTCTGAATCCCAATGCAAAGgtgtgaaagt ... atgttataagGAATTCAAGCTTAACCCTAATGCAAAGAGTTTTATTCCATCGCCTGCTCGG
EST: CAGTTTGTTCACTGTCTTCTGAAAAATCAACTCTGAATCCCAATGCAAAG GAATTCAAGCTTAACCCTAATGCAAAGAGTTTTATTCCATCGCCTGCTCGGEST: gi|14205753|gb|BG839431.1|BG839431
genomic: CAGTTTGTTCACTGTCTTCTGAAAAATCAACTCTGAATCCCAATGCAAAGgtgtgaaagt ... atgttataagGAATTCAAGCTTAACCCTAATGCAAAGAGTTTTATTCCATCGCCTGCTCGG
EST: CAGTTTGTTCACTGTCTTCTGAAAAATCAACTCTGAATCCCAATGCAAAG GAATTCAAGCTTAACCCTAATGCAAAGAGTTTTATTCCATCGCCTGCTCGGEST: gi|208192411|gb|GD988803.1|GD988803
genomic: CAGTTTGTTCACTGTCTTCTGAAAAATCAACTCTGAATCCCAATGCAAAGgtgtgaaagt ... atgttataagGAATTCAAGCTTAACCCTAATGCAAAGAGTTTTATTCCATCGCCTGCTCGG
EST: CAGTTTGTTCACTGTCCTCTGAAAAATCAACTCTGAATCCCAATGCAAAG GAATTCAAGCTTAACCCTAATGCAAAGAGTTTTATTCCATCGCCTGCTCGG
genomic: CAGTTTGTTCACTGTCTTCTGAAAAATCAACTCTGAATCCCAATGCAAAGgtgtgaaagt ... atgttataagGAATTCAAGCTTAACCCTAATGCAAAGAGTTTTATTCCATCGCCTGCTCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTGGAGGCATTGCAGCATCTTCTGTTCCTGGTTTATCTCCAAGTTCATCAGTTTGTTCACTGTCTTCTGAAAAATCAACTCTGAATCCCAATGCAAAGgtgtgaaagttcaagattgactttttgaaaaaggaatatttttcactagctgattctgatattttatattaccgacatatgtcggagtttcccccctttcatgttataag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG