Sequence
atgc intronic sequence ATGC exonic sequenceTTCTGACCCTTCATGAAATGCTTCCATTGGCTTTTGATTATGCGGGACAGAAGCAATCTGTGAAGGCTGTCTTTTTGGGGATGGCTTTCATGTCTGCAAGgtcagaatctcatttctaatcaaatagtttttcaagagctgatgatatagctttttatttttatttttttattgctactttggtaagatatttaatgcat...
Basic information
species | Glycine max |
transcript | GLYMA13G41580.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G41580.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G050484_T01 (Zea mays), 5'ss of exon 11
TTCTGACCCTTCATGAAATGCTTCCATTGGCTTTTGATTATGCGGGACAGAAGCAATCTGTGAAGGCTGTCTTTTTGGGGATGGCTTTCATGTCTGCAAGgtcagaatctcatttctaatcaaata---gtttttcaagagctgatgatatagcttt-ttatttttattttttta-ttgctactttggtaagatatttaatgcat
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TCCTCACTTTGCATGAAATGCTGCCTCTTGCATTTGACTATTGTGGCCAGAAGCAAGCTGTCAAAGCTGTCTTTGTGGGCATGGCCTGCATGTCTGCAAGgtttgtcgatt-cttcaaattaagcaaagggattccttgagtaaacattttgtcttaatgaccagtatggatttgctttccctttccgcaaaagactcgta----
upper sequence: GLYMA13G41580.1 (Glycine max), 5'ss of exon 11
lower sequence: AT3G20870.1 (Arabidopsis thaliana), 5'ss of exon 11
TTCTGACCCTTCATGAAATGCTTCCATTGGCTTTTGATTATGCGGGACAGAAGCAATCTGTGAAGGCTGTCTTTTTGGGGATGGCTTTCATGTCTGCAAGgtcagaatctcatttctaatcaaatagtttttcaagagctgatgatatagctttttatttttatttttttattgctactttggtaagatatttaatgcat-
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TCCTAACATTGCACGAAATGCTTCCTTTGGCATTTGATTATGCGGGACAGAAACAAGCTGTGAAAGCTGTGTTTTTTGGCATGGCATGTATGTCTGCGAGgtaaaaatg-caaacctgagaacccatattcataaatctacttgctgtaaaacataattgaggccttgaaatagtacttgcatcctaggattcaacctagt
upper sequence: GLYMA13G41580.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv06s0004g01860.t01 (Vitis vinifera), 5'ss of exon 11
TTCTGACCCTTCATGAAATGCTTCCATTGGCTTTTGATTATGCGGGACAGAAGCAATCTGTGAAGGCTGTCTTTTTGGGGATGGCTTTCATGTCTGCAAGgtcagaatctcatttctaatcaaatagtttttcaagagctgatgatatagcttttt---atttttatttttttattgctactttggtaagatatttaatgcat
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TTCTTACCTTGCATGAAATGCTGCCATTGGCATTTGACTATGCTGGGCCGAAGCAAGCTGTCAAGGCAGTCTTCTTTGGAATGGCTTTCATGTCTGCAAGgt-aaaatca-actcctagcaggacactctttcagaagccatttaaaaagtttctggtaatttcaatgattttggtagccctacaacctggaagaaaaaaaa-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7029691|gb|AW459474.1|AW459474EST: AAGCAATCTGTGAAGGCTGTCTTTTTGGGGATGGCTTTCATGTCTGCAAG CCTGTATTTTCTAAGTATCAGCTTACCTGAGGACTTAAGCTTGTA
genomic: AAGCAATCTGTGAAGGCTGTCTTTTTGGGGATGGCTTTCATGTCTGCAAGgtcagaatct ... ggatgtgcagCCTGTATTTTCTAAGTATCAGCTTACCTGAGGACTTAAGCTTGTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTCTGACCCTTCATGAAATGCTTCCATTGGCTTTTGATTATGCGGGACAGAAGCAATCTGTGAAGGCTGTCTTTTTGGGGATGGCTTTCATGTCTGCAAGgtcagaatctcatttctaatcaaatagtttttcaagagctgatgatatagctttttatttttatttttttattgctactttggtaagatatttaatgcat
- - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA