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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGGGGCAAGGTTTGCATACCAAAGTTGCCCAAATTGCTGCTTCAGCTTTCCATATCCCTCTTAGTTCTGTCTTTATATCAGATACTAGTACTGACAAGgtatttagttacactttttacgggtttatgttgtttttattcttggaaattagtctcagctatatcatccaaacttaccaagtaaataagtaatttatta...

Basic information

species Glycine max
transcript GLYMA13G41520.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G41520.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os03g31550.2 (Oryza sativa), 5'ss of exon 10
AATGGGGCAAGGTTTGCATACCAAAGTTGCCCAAATTGCTGCTTCAGCTTTCCATATCCCTCTTAGTTCTGTCTTTATATCAGATACTAGTACTGACAAGgta---tttagt---tacactttttacg---ggtttatgttgtttt------tattcttggaaa---ttagtctcagctatatcatccaaacttacca-agtaaataagtaatttatta-------------------------
||||||||| ||||| || || || || |||||| |||| |||||| | ||| ||||||||||||| ||| | ||||| ||||| || || ||||| |||||    ||| |    |  ||||  |||    | |||   | || |       |||||   |||    ||| ||| |  | |  |  |   | || | |   |   | | | | | || |                         
AATGGGGCAGGGTTTACACACAAAGGTAGCCCAAGTTGCGGCTTCATCATTCAATATCCCTCTTAGCTCTATATTTATCTCAGAAACAAGCACTGATAAGgtgagttttggcatatggacttgctacatttgatttgcatggtctatcaatgtattcaatgaagatgttattcttatatgttactactttatttccaatgatgggttaatcagtaatcacacatgtgctcatctcaatacttag

upper sequence: GLYMA13G41520.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G050984_T01 (Zea mays), 5'ss of exon 6
AATGGGGCAAGGTTTGCATACCAAAGTTGCCCAAATTGCTGCTTCAGCTTTCCATATCCCTCTTAGTTCTGTCTTTATATCAGATACTAGTACTGACAAGgt------------atttagttacactttttacggg---tttatgttgtttttattcttggaaattagtctcagctata--tcatccaaacttaccaagtaaataag---taatttatta--
 ||||| || |||||||| || || || |||||| ||||||| ||  | ||| ||||||||||||| ||||| ||||||||||| || |||||||| |||||            ||  |  ||| | || | |  |   ||||   |  || || | ||    |||| | | |  ||||  |  | | ||   |   ||   ||  |     || | ||   
GATGGGACAGGGTTTGCACACAAAGGTAGCCCAAGTTGCTGCCTCGTCATTCAATATCCCTCTTAGCTCTGTATTTATATCAGAGACAAGTACTGATAAGgtgaggtccgacacatggatgtaccccttctgcatgatttttacactagttgtactttttttcattacttttatttataagttgtgccaatacaatgaggtgatgggattccatctgtttag

upper sequence: GLYMA13G41520.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv06s0004g02030.t01 (Vitis vinifera), 5'ss of exon 10
AATGGGGCAAGGTTTGCATACCAAAGTTGCCCAAATTGCTGCTTCAGCTTTCCATATCCCTCTTAGTTCTGTCTTTATATCAGATACTAGTACTGACAAGgtatttagttacactttttacgggtttatgttgtttttattcttggaaatt----agtctcagctatatcatccaaacttaccaagtaaataagtaatttatta
 |||||||||||||| ||||| |||||||| ||| ||||||||||  | ||| |||| || || |||||||| ||||||||||| || ||||| ||||||||| |  |  ||| | |    |      |    | | |||| |    | ||      ||||||  ||||          |   || |   | |  || |  || 
GATGGGGCAAGGTTTACATACAAAAGTTGCTCAAGTTGCTGCTTCTTCCTTCAATATTCCACTCAGTTCTGTATTTATATCAGAGACAAGTACCGACAAGgtaatggg--acaatgtcagagtcccattaacatctctattttgtctactttctggttctcag--atattgatatgctgtgataaatttgttacaaactcgttg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14990536|gb|BI316209.1|BI316209
EST:     TCCATATCCCTCTTAGTTCTGTCTTTATATCAGATACTAGTACTGACAAG                         GTTCCTAATGCTTCTCCAACAGCAGCTTCTGCAAGTTCTGATATGTATGGA
genomic: TCCATATCCCTCTTAGTTCTGTCTTTATATCAGATACTAGTACTGACAAGgtatttagtt ... ggcaaattagGTTCCTAATGCTTCTCCAACAGCAGCTTCTGCAAGTTCTGATATGTATGGA
EST: gi|33389941|gb|CA853148.1|CA853148
EST:     TCCATATCCCTCTTAGTTCTGTCTTTATATCAGATACTAGTACTGACAAG                         GTTCCTAATGCTTCTCCAACAGCAGCTTCTGCAAGTTCTGATATGTATGGA
genomic: TCCATATCCCTCTTAGTTCTGTCTTTATATCAGATACTAGTACTGACAAGgtatttagtt ... ggcaaattagGTTCCTAATGCTTCTCCAACAGCAGCTTCTGCAAGTTCTGATATGTATGGA