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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTATTGCAGTCACTCAACCCCTGAATTCTTTAGCATTTGTATTTGATGGTGTCAACTTTGGGGCATCTGATTTTGCATATTCAGCCTTCTCCATGgtgagtattttcttccattttatggtattatgataaatggcatattcagccttctgccttaaatatttaggactactttattatggtaactctcag

Basic information

species Glycine max
transcript GLYMA13G41460.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G41460.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv06s0004g02140.t01 (Vitis vinifera), 5'ss of exon 11
TTTATTGCAGTCACTCAACCCCTGAATTCTTTAGCATTTGTATTTGATGGTGTCAACTTTGGGGCATCTGATTTTGCATATTCAGCCTTCTCCATGgtgagtattttcttccattttatggtattatgataaatggcatattcagccttctgccttaaatatttaggactact-ttattatggtaactctcag
||| ||||||| ||||||||  | || ||| | || ||||| |||||||| ||||||||||| |||||||||||||||||||| || |  |||||||| ||| |  |||     || |  || |||  | ||||           | |||| | |    || |   || || | || ||     ||       
TTTGTTGCAGTTACTCAACCTATCAACTCTCTGGCCTTTGTTTTTGATGGGGTCAACTTTGGTGCATCTGATTTTGCATATTCTGCATATTCCATGgtaagtctaatctcttccttga--gtgttac-acaaat-----------ctttcttcatgggctaatcgagattaatcttctttccacaaaag----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209702018|gb|BW677925.1|BW677925
EST:     TCAACTTTGGGGCATCTGATTTTGCATATTCAGCCTTCTCCATG                         GTTGTGGTGGCAATTCTTAGCATCATTTCTCTGCTTATTTTGTCATCCGCT
genomic: TCAACTTTGGGGCATCTGATTTTGCATATTCAGCCTTCTCCATGgtgagtattt ... taactctcagGTTGTGGTGGCAATTCTTAGCATCATTTCTCTGCTTATTTTGTCATCCGCT
EST: gi|19270283|gb|BM886539.1|BM886539
EST:     ATGGTGTCAACTTTGGGGCATCTGATTTTGCATATTCAGCCTTCTCCATG                         GTTGTGGTGGCAATTCTTAGCATCATTTCTCTGCTTATTTTGTCATCCGCT
genomic: ATGGTGTCAACTTTGGGGCATCTGATTTTGCATATTCAGCCTTCTCCATGgtgagtattt ... taactctcagGTTGTGGTGGCAATTCTTAGCATCATTTCTCTGCTTATTTTGTCATCCGCT
EST: gi|51341966|gb|CO983283.1|CO983283
EST:     ATGGTGTCAACTTTGGGGCATCTGATTTTGCATATTCAGCCTTCTCCATG                         GTTGTGGTGGCAATTCTTAGCATCATTTCTCTGCTTATTTTGTCATCCGCT
genomic: ATGGTGTCAACTTTGGGGCATCTGATTTTGCATATTCAGCCTTCTCCATGgtgagtattt ... taactctcagGTTGTGGTGGCAATTCTTAGCATCATTTCTCTGCTTATTTTGTCATCCGCT
EST: gi|192298304|gb|FG992094.1|FG992094
EST:     ATGGTGTCAACTTTGGGGCATCTGATTTTGCATATTCAGCCTTCTCCATG                         GTTGTGGTGGCAATTCTTAGCATCATTTCTCTGCTTATTTTGTCATCCGCT
genomic: ATGGTGTCAACTTTGGGGCATCTGATTTTGCATATTCAGCCTTCTCCATGgtgagtattt ... taactctcagGTTGTGGTGGCAATTCTTAGCATCATTTCTCTGCTTATTTTGTCATCCGCT
EST: gi|16106302|gb|BI894042.1|BI894042
EST:     ATGGTGTCAACTTTGGGGCATCTGATTTTGCATATTCAGCCTTCTCCATG                         GTTGTGGTGGCAATTCTTAGCATCATTTCTCTGCTTATTTTGTCATCCGCT
genomic: ATGGTGTCAACTTTGGGGCATCTGATTTTGCATATTCAGCCTTCTCCATGgtgagtattt ... taactctcagGTTGTGGTGGCAATTCTTAGCATCATTTCTCTGCTTATTTTGTCATCCGCT