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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGATGGATTCCCCACTCTTCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCTgtacgtgaatattaaacaacagtactttttttattttatttttatcaattttgctattctaaatgtgcatgtatgctttatcattgggtgattgaactatatataattggttcattgtgtctgcag

Basic information

species Glycine max
transcript GLYMA13G40130.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G40130.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv06s0004g02890.t01 (Vitis vinifera), 5'ss of exon 11
CCTGATGGATTCCCCACTCTTCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCTgtacgtgaatattaaacaacagtactttttttattttatttttatcaattttgctattctaaatgtgcatgtatgctttat--cattgggtgattgaactatatataattggttcattgtgtctgcag
 ||||||| |||||||| ||||| |||||||| |||||||||||||||| ||| || ||| || | |  |  | || | | |  | |    |||    ||    ||| |||| | ||| || |  ||||  ||||| |  |  | | | || |   |        ||||                
TCTGATGGGTTCCCCACACTTCTATTCTTCCCAGCAGGAAACAAGAGTTCTGATCCAgtaagtca-tgcttcaaaata-tgcaatctggggttttcccttgaatattctgctttcctagatctatatgttggcttttttcccctagctaatggggatcctgggttttggcag-------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209714609|gb|BW662245.1|BW662245
EST:     GATTCCCCACTCTTCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCT                         ATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
genomic: GATTCCCCACTCTTCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCTgtacgtgaat ... gtgtctgcagATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
EST: gi|8403249|gb|BE058883.1|BE058883
EST:     GATTCCCCACTCTTCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCT                         ATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
genomic: GATTCCCCACTCTTCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCTgtacgtgaat ... gtgtctgcagATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
EST: gi|193717911|gb|FK655983.1|FK655983
EST:     GATTCCCCACTCTTCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCT                         ATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
genomic: GATTCCCCACTCTTCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCTgtacgtgaat ... gtgtctgcagATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
EST: gi|26059696|gb|CA802610.1|CA802610
EST:     GATTCCCCACTCTTCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCT                         ATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
genomic: GATTCCCCACTCTTCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCTgtacgtgaat ... gtgtctgcagATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
EST: gi|6846143|gb|AW348433.1|AW348433
EST:     GATTCCCCACTCTTCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCT                         ATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
genomic: GATTCCCCACTCTTCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCTgtacgtgaat ... gtgtctgcagATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
EST: gi|254316462|gb|GR827999.1|GR827999
EST:     GATTCCCCACTCTTCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCT                         ATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
genomic: GATTCCCCACTCTTCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCTgtacgtgaat ... gtgtctgcagATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
EST: gi|4289796|gb|AI437977.1|AI437977
EST:     GATTCCCCACTCTTCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCT                         ATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
genomic: GATTCCCCACTCTTCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCTgtacgtgaat ... gtgtctgcagATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
EST: gi|192331238|gb|FK020977.1|FK020977
EST:     GATTCCCCACTCTTCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCT                         ATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
genomic: GATTCCCCACTCTTCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCTgtacgtgaat ... gtgtctgcagATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
EST: gi|192331239|gb|FK020978.1|FK020978
EST:     GATTCCCCACTCTTCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCT                         ATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
genomic: GATTCCCCACTCTTCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCTgtacgtgaat ... gtgtctgcagATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
EST: gi|208225225|gb|GE022242.1|GE022242
EST:     GATTCCCCACTCTTCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCT                         ATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
genomic: GATTCCCCACTCTTCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCTgtacgtgaat ... gtgtctgcagATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
EST: gi|13240110|gb|BG359419.1|BG359419
EST:     GATTCCCCACTCTTCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCT                         ATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
genomic: GATTCCCCACTCTTCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCTgtacgtgaat ... gtgtctgcagATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
EST: gi|254316461|gb|GR827998.1|GR827998
EST:     GATTCCCCACTCTTCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCT                         ATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
genomic: GATTCCCCACTCTTCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCTgtacgtgaat ... gtgtctgcagATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
EST: gi|6725175|gb|AW309574.1|AW309574
EST:     GATTCCCCACTCTTCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCT                         ATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
genomic: GATTCCCCACTCTTCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCTgtacgtgaat ... gtgtctgcagATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
EST: gi|31462823|gb|CD404851.1|CD404851
EST:     CCCCACTCTTCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCT                         ATTACTGTTGATACAGATCGTACAGTGGTAGCCTTGTACAAGTTCCTCAAG
genomic: CCCCACTCTTCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCTgtacgtgaat ... gtgtctgcagATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
EST: gi|192326874|gb|FK015131.1|FK015131
EST:     GATTCCCCACTCTTCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCT                         ATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
genomic: GATTCCCCACTCTTCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCTgtacgtgaat ... gtgtctgcagATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
EST: gi|33387977|gb|CA851184.1|CA851184
EST:     GATTCCCCACTCTTCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCT                         ATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
genomic: GATTCCCCACTCTTCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCTgtacgtgaat ... gtgtctgcagATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
EST: gi|6069456|gb|AW099142.1|AW099142
EST:     GATTCCCCACTCTTCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCT                         ATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
genomic: GATTCCCCACTCTTCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCTgtacgtgaat ... gtgtctgcagATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
EST: gi|31464264|gb|CD406292.1|CD406292
EST:     GATTCCCCACTCTTCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCT                         ATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
genomic: GATTCCCCACTCTTCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCTgtacgtgaat ... gtgtctgcagATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
EST: gi|23731199|gb|BU763711.1|BU763711
EST:     GATTCCCCACTCTTCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCT                         ATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
genomic: GATTCCCCACTCTTCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCTgtacgtgaat ... gtgtctgcagATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
EST: gi|209714608|gb|BW662244.1|BW662244
EST:     GATTCCCCACTCTTCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCT                         ATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
genomic: GATTCCCCACTCTTCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCTgtacgtgaat ... gtgtctgcagATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
EST: gi|7029455|gb|AW459238.1|AW459238
EST:     GATTCCCCACTCTTCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCT                         ATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
genomic: GATTCCCCACTCTTCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCTgtacgtgaat ... gtgtctgcagATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG