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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGACACATACTTGATGTTGCTGACCACTAGTTCTGATGCATTTTACCATCTTAAGGATTGCAGgtaaatgatggtttaataatctgactgctgttattgttgggttcatgatgttttatttgggagaaaagaagaaaattaaaaaggggagagaacataatgattcatagcaaagagatcctcagtctctacgtagcaatatctttcttggctgcttggttcagaatcttgtttgccaattcacag

Basic information

species Glycine max
transcript GLYMA13G40080.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G40080.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv06s0004g02820.t01 (Vitis vinifera), 5'ss of exon 10
GATGACACATACTTGATGTTGCTGACCACTAGTTCTGATGCATTTTACCATCTTAAGGATTGCAGgtaaatgatggtttaataatctgactgctgttattgttgggttcatgatgttttatttgggagaaaagaagaaaattaaaaaggggagagaacataatgattcatagcaaagagatcctcagtctctacgtagcaatatctttcttggctgcttggttcagaatcttgtttgccaattc-acag
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GTTGACACATACTTGATGTTGCTTACTACTAAATCAGATGCTTTCTATCATCTCAAAGATTGCAGgtaaaccatgacgctttaacttgataaatgct-tggtgaaatt--tgatagcagaagcca-actaaatattttctccacatgaatgatggaaaattcacatcttcgcctagtgtgttccagataatttattcttgtttcctgtctt--cttcctgtgttaagat----ttaactaattctatag