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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTGTGGAAATTATGGCACCTGTCTTTTCTCGTGAGGCTTGGCGTTGTGTGTGGCACATGATTCAGgtatattttattttccttgttgcatatgatggctatggtaacatagtctatgaacaggtgaatttttctcttacatgctatataatcttagtaattatactgatgaactttccaaatatcttcttgtag

Basic information

species Glycine max
transcript GLYMA13G39990.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G39990.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os01g68260.1 (Oryza sativa), 5'ss of exon 10
ATTTGTGGAAATTATGGCACCTGTCTTTTCTCGTGAGGCTTGGCGTTGTGTGTGGCACATGATTCAGgtatattt-tattttccttgttgcatatgatggctatggtaacatagtctatgaacaggtgaatttttctcttacatgctatataatcttagtaattatactgatgaactttccaaatatcttcttgtag
|||||| |||||||||||| |||| || ||| | || || ||||| ||||| ||||| |||||||||||  | |   || | |  ||||        ||  |   |    || |  ||||  | | |   |||| |                                                             
ATTTGTTGAAATTATGGCAACTGTGTTCTCTAGGGATGCATGGCGCTGTGTATGGCATATGATTCAGgtggagtggcatctgcactgttcttagctttgcttgaagctgtat-gcttatgcccggct---ttttgcag-----------------------------------------------------------

upper sequence: GLYMA13G39990.1 (Glycine max), 5'ss of exon 11
lower sequence: AT2G28310.2 (Arabidopsis thaliana), 5'ss of exon 11
ATTTGTGGAAATTATGGCACCTGTCTTTTCTCGTGAGGCTTGGCGTTGTGTGTGGCACATGATTCAGgtatattttattttccttgttgcatatgatggctatggtaacatagtctatgaacaggtgaatttttctcttacatgctatataatcttagtaattatactgatgaactttccaaatatcttcttgtag
 ||||| ||||| ||||| ||||| |||||||| || || ||||| ||||||||||| |||||||||||   |  |   |   | | | ||||     |   | ||  | ||||| || || |      || || | ||         || |  ||  | ||  | |||||| |                      
GTTTGTTGAAATAATGGCGCCTGTATTTTCTCGAGAAGCATGGCGATGTGTGTGGCATATGATTCAGgt---tcgtcgatctgtagatacata-----gtcctagt--cttagtccatcaaaataatgcttgttgttttg--------atcagtttgtttatgtttctgatgcag---------------------

upper sequence: GLYMA13G39990.1 (Glycine max), 5'ss of exon 11
lower sequence: AT1G08040.2 (Arabidopsis thaliana), 5'ss of exon 11
ATTTGTGGAAATTATGGCACCTGTCTTTTCTCGTGAGGCTTGGCGTTGTGTGTGGCACATGATTCAGgtat-------attttattttccttgttgcatatgatggctatggtaacatagtctatga-acaggtgaatttttctcttacatgctatataatcttagtaattatactgatgaactttccaaat-atcttcttgtag--------------------------------
 ||||| || |||||||||||||| |||||| | || || ||||| ||||| ||||| ||||||||||| |       | ||||||  |||| || |    | |    |    | |  | | | ||  |  | ||||| |  |  |    |   ||  |    |   ||  |   ||   |   ||||| |  |||   | ||||                                
GTTTGTTGAGATTATGGCACCTGTATTTTCTAGAGAAGCATGGCGATGTGTATGGCATATGATTCAGgtttttgtttaactttattcacctttttacgatcggtattcacatgacccaaatttgtggcattgatgaatcta-cgttggtttctgattaagctatcaaaaggagtttgtctagtcttccagaccatcacttggtagcctaaaaacaatcttgtttgtttctggtgcag

upper sequence: GLYMA13G39990.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv06s0004g02700.t01 (Vitis vinifera), 5'ss of exon 11
ATTTGTGGAAATTATGGCACCTGTCTTTTCTCGTGAGGCTTGGCGTTGTGTGTGGCACATGATTCAGgtatattttattttccttg-ttgcatatgatggctatg-gtaacatagtctatgaacaggtgaatttttctcttacatgctatataatcttagtaattatactgatgaactttccaaatatcttcttgtag
|||||||||||||||||| |||||||| ||||| || |||||||||||||||||||| |||||||||||||  ||||| ||    | ||  || || |  |||    |  || |   ||  | || |   || |||    | || | |||      |  || ||   |  |                           
ATTTGTGGAAATTATGGCCCCTGTCTTCTCTCGGGAAGCTTGGCGTTGTGTGTGGCATATGATTCAGgtatcctttatcttttaggattatat-tgctttctacacatggcacatgttacaagcatgcacatcttttctcttcaagttattc---ttctgttatctcatag---------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12691502|gb|BG157838.1|BG157838
EST:     TGGCGTTGTGTGTGGCACATGATTCAG                         AACGATCTATTGCATGGATGGGGATTGGACTTTGCTCTCAGAAGATGTGTA
genomic: TGGCGTTGTGTGTGGCACATGATTCAGgtatatttta ... cttcttgtagAACGATCTAGTGCATGGATGGGGATTGGACTTTGCTCTCAGAAGATGTGTA
EST: gi|10234562|gb|BE803450.1|BE803450
EST:     CACCTGTCTTTTCTCGTGAGGCTTGGCGTTGTGTGTGGCACATGATTCAG                         AACGATCTAGTGCATGGATGGGGATTGGACTTTGCTCTCAGAAGATGTGTA
genomic: CACCTGTCTTTTCTCGTGAGGCTTGGCGTTGTGTGTGGCACATGATTCAGgtatatttta ... cttcttgtagAACGATCTAGTGCATGGATGGGGATTGGACTTTGCTCTCAGAAGATGTGTA
EST: gi|18848780|gb|BM567892.1|BM567892
EST:     CACCTGTCTTTTCTCGTGAGGCTTGGCGTTGTGTGTGGCACATGATTCAG                         AACGATCTAGTGCATGGATGGGGATTGGACTTTGCTCTCAGAAGATGTGTA
genomic: CACCTGTCTTTTCTCGTGAGGCTTGGCGTTGTGTGTGGCACATGATTCAGgtatatttta ... cttcttgtagAACGATCTAGTGCATGGATGGGGATTGGACTTTGCTCTCAGAAGATGTGTA