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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATATGGCAGGGTTGATAAGCAAGATAAACCGTTCCTCTATTGGCCCTTTGCCTCCCTGTTATTCCCCATCTTTgtaagtttcatttgcttttgttaaggctagtatcattatgttagtagaaagtgagtgattactcaggatttcttggtgaaatcacattcatttggcagaa...

Basic information

species Glycine max
transcript GLYMA13G38980.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G38980.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os01g64490.1 (Oryza sativa), 5'ss of exon 12
GATATGGCAGGGTTGATAAGCAAGATAAACCGTTCCTCTATTGGCCCTTTGCCTCCCTGTTATTCCCCATCTTTgtaagtttcatttgcttttgttaaggctagtatcattatgttagtagaaagtgagtgattactcaggatttcttggtgaaatcacattcatttggcagaa-----
|||||||| ||  | || || |||||||| || ||||| ||||||||||||||||| || || || |||||| |||||||        | ||   ||   ||    | || ||    | ||    ||  |  |  |       || ||  | |||||  |||   ||    |       
GATATGGCTGGACTAATTAGTAAGATAAATCGCTCCTCCATTGGCCCTTTGCCTCCATGCTACTCTCCATCTATgtaagtgc-----acattcactatatctgtattgatcatacatggagtctttgctttttctcatttttcttgttcataaaatccaattttcttcatcgtcatatc

upper sequence: GLYMA13G38980.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G074262_T01 (Zea mays), 5'ss of exon 12
GATATGGCAGGGTTGATAAGCAAGATAAACCGTTCCTCTATTGGCCCTTTGCCTCCCTGTTATTCCCCATCTTTgtaagtttcatt---tgcttttgttaaggctagtatcattatgttagtagaaagtgagtgattactcaggatttcttggtgaaatcac---attcat--ttggcagaa------------------------
|||||||| ||  ||||||| |||||||| || ||||| ||||||||||||||| | |  |||||  ||||| ||||||| |       | | ||||  || |  | |     ||||| |  ||      |   ||   ||  | ||  ||||  | || |     | |||   | ||  |                         
GATATGGCTGGACTGATAAGTAAGATAAATCGCTCCTCCATTGGCCCTTTGCCTACTTTCTATTCTTCATCTATgtaagtattgaacagtacatttggcaatgaaattggtcatatgtaaa-agttttcaatccatctttcttgtttgtttggaaatattatccagtgcatgactagctaatgtaccattttactgttgaatacag

upper sequence: GLYMA13G38980.1 (Glycine max), 5'ss of exon 11
lower sequence: AT3G44200.1 (Arabidopsis thaliana), 5'ss of exon 11
GATATGGCAGGGTTGATAAGCAAGATAAACCGTTCCTCTATTGGCCCTTTGCCTCCCTGTTATTCCCCATCTTTgtaagtttcatttgcttttgttaaggctagtatcattatgtt-agtagaaagtgagtgattactcaggatttcttggtgaaatcacattcatttggcagaa----
|||||||||||| | ||||||||| | || || ||||| ||||| || |||||||| || ||||| ||||||||||||| |||  || ||  ||     ||| || |  || | || | ||| | |    |   |||| |  |  |    |  | || | |   ||    |||||    
GATATGGCAGGGCTTATAAGCAAGGTTAATCGCTCCTCAATTGGTCCGTTGCCTCCGTGCTATTCACCATCTTTgtaagattctctttctaatg----agcttgtgtttttttatttattagtatgccgatttatacttataacatgccagcaatat-aaaaagatagaacagaacatt

upper sequence: GLYMA13G38980.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv06s0009g00690.t01 (Vitis vinifera), 5'ss of exon 11
GATATGGCAGGGTTGATAAGCAAGATAAACCGTTCCTCTATTGGCCCTTTGCCTCCCTGTTATTCCCCATCTTTgtaagtttcatttgcttttgttaaggctagtatcattatgttagtagaaagtga-gtgattactcaggatttcttggtgaaatcacattcatttggcagaa------
|||||||| || || ||||| || ||||||||||| |||||||| ||||||||  | || |||||||| ||||||||||| ||         |||||||  |    |  || |||   |   | |  | | ||||    |  || || |  ||      ||   | | ||||         
GATATGGCTGGATTAATAAGTAAAATAAACCGTTCTTCTATTGGTCCTTTGCCCTCATGCTATTCCCCTTCTTTgtaagtctc-------catgttaagattgaatttcttgtgtgcttgatatgcaaagagattctggaatatatcatattgtctgtgcagcaactaggcaatgcctaga