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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGATATTCTTTCCAACGGTGGAGTTGTCCAAGAAATGGCACACATTGCCAATGGCCGAGACACTGGAAATTGTGTCTCCCTACTTCGTGTGAATgtaagttgaccaaccatataaccacatttactattcatcaatttcaccaaatctttctttttcattaatttctagtcaaattaacaaagtgaataagtttgactaacccaagtttcgaatggtgcatgtag

Basic information

species Glycine max
transcript GLYMA13G38430.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G38430.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv12s0059g02310.t01 (Vitis vinifera), 5'ss of exon 10
TGGGATATTCTTTCCAACGGTGGAGTTGTCCAAGAAATGGCACACATTGCCAATGGCCGAGACACTGGAAATTGTGTCTCCCTACTTCGTGTGAATgtaagttgaccaaccatataaccacatttactattcatcaatttcaccaaatctttctttttcattaatttctagtcaaattaacaaa-gtgaataagtttgactaacccaagtttcgaatggtgcatgtag
||||||||||| || || ||||| ||||| |||||||||||||| || || ||||| | |||||| || || ||||| || ||  | || || |||||| ||| |  |    |||||     ||| ||| |  |   | | |    |    |  | | | | ||   | |      ||||| |  ||||| |  | |                               
TGGGATATTCTCTCAAATGGTGGGGTTGTTCAAGAAATGGCACATATAGCGAATGGTCAAGACACAGGCAACTGTGTATCTCTGTTACGGGTAAATgtaggttaat-atttctataa-----ttttctagttcttgttcttattttagtgcttgtgtccttcaa---ccaacatgcttaaccattgtgaacatttctag-----------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51335776|gb|CO979642.1|CO979642
EST:     AATGGCCGAGACACTGGAAATTGTGTCTCCCTACTTCGTGTGAAT                         AGTGCGAATTCAAGCCAAAGCAACATGTTGATATTACAAGAGAGTTGCGCG
genomic: AATGGCCGAGACACTGGAAATTGTGTCTCCCTACTTCGTGTGAATgtaagttgac ... gtgcatgtagAGTGCGAATTCAAGCCAAAGCAACATGTTGATATTACAAGAGAGTTGCGCG
EST: gi|17402063|gb|BM178845.1|BM178845
EST:     TTGCCAATGGCCGAGACACTGGAAATTGTGTCTCCCTACTTCGTGTGAAT                         AGTGCGAATTCAAGCCAAAGCAACATGTTGATATTACAAGAGAGTTGCGCG
genomic: TTGCCAATGGCCGAGACACTGGAAATTGTGTCTCCCTACTTCGTGTGAATgtaagttgac ... gtgcatgtagAGTGCGAATTCAAGCCAAAGCAACATGTTGATATTACAAGAGAGTTGCGCG
EST: gi|6914943|gb|AW396473.1|AW396473
EST:     TTGCCAATGGCCGAGACACTGGAAATTGTGTCTCCCTACTTCGTGTGAAT                         AGTGCGAATTCAAGCCAAAGCAACATGTTGATATTACAAGAGAGTTGCGCG
genomic: TTGCCAATGGCCGAGACACTGGAAATTGTGTCTCCCTACTTCGTGTGAATgtaagttgac ... gtgcatgtagAGTGCGAATTCAAGCCAAAGCAACATGTTGATATTACAAGAGAGTTGCGCG