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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATCGAGCTCTTAATGACCTCTTTAGCATATCCACAAGTAGAAAAGGCTCCATAGAGTATGACATTGGGGTTCAAATAATTGAGATATATAATGAACAAgtgcgtgacttgttatcaactgatgcttcttcaaaaaaatatcctttttcaattattatggacaatttattctttgcataaactttcttcttctagtttttctttcaattatttttggaaaagaaaatatatgaag

Basic information

species Glycine max
transcript GLYMA13G33390.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G33390.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv17s0000g03700.t01 (Vitis vinifera), 5'ss of exon 14
CTATCGAGCTCTTAATGACCTCTTTAGCATATCCACAAGTAGAAAAGGCTCCATAGAGTATGACATTGGGGTTCAAATAATTGAGATATATAATGAACAAgtgcgtgacttgttatcaactgatgcttcttcaaaaaaatatcctttttcaattattatggacaatttattctt---tgcataaactttcttcttctagtttttctttcaattatttttggaaaagaaaatatatgaag
                         ||   |  || ||| || | | ||||  |   |||||| ||||| ||||||||  |||| ||||| ||||||||||||||||| ||  |||||| ||||  ||||  |||||||||||||| |  | | ||| |      ||          || | |||   | | |||||   ||   |||||  |  | ||                    
------------------------GAGATCACTCA-AAGCAGGAGAAGCTCATTTATGTATGAAATTGGAGTTCAAATGGTTGAAATATACAATGAACAAGTGCGTGATTTACTATCAAGTGATAgttctcaaaaaaaatatccttctctattcattttcattctttggcataaagatgtaaaaaggatatccttctctattcattttcatcttctgttttcgct--------------