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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCCATTTGAAGTCCTTGTGCGAAGGCAAATATCGCGTCTATTGGATCCAAGCCTTCAATGTGCCAGGTTTATATATGATGAATTAATAAAGgtaggaacatggctttaaaagtttgtcatctctgctgtcttgctttatgaagaatgtgcctaaacaaaatcccttctcttcag

Basic information

species Glycine max
transcript GLYMA13G32940.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G32940.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv03s0038g00970.t01 (Vitis vinifera), 5'ss of exon 12
GTGCCATTTGAAGTCCTTGTGCGAAGGCAAATATCGCGTCTATTGGATCCAAGCCTTCAATGTGCCAGGTTTATATATGATGAATTAATAAAGgtaggaacatggctttaaaagtttgtcatctctgctgtcttgctttatgaagaatgtgcctaaacaaaatcccttctcttcag
||||| |||||||| |||||| ||||||||||| | ||| | || |||||||||||||| ||||| || || ||||||||||| ||| ||||||||| ||  |     |     |||        ||  |   |  | |||| |   |   |    |  || |   | | || |||
GTGCCGTTTGAAGTTCTTGTGAGAAGGCAAATAGCTCGTTTGTTAGATCCAAGCCTTCAGTGTGCTAGATTCATATATGATGAGTTAGTAAAGgtagaaaattcttacttggcattttatgctcttggggcactattatatgcatctttaacactgatcaagtgattccactccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254339195|gb|GR847912.1|GR847912
EST:     TGGATCCAAGCCTTCAATGTGCCAGGTTTATATATGATGAATTAATAAAG                         ATCAGCCATCGCTGTATGGTGACTGAACTGCAGCGATTCCCTTTCTTGCGG
genomic: TGGATCCAAGCCTTCAATGTGCCAGGTTTATATATGATGAATTAATAAAGgtaggaacat ... ttctcttcagATCAGCCATCGCTGTATGGTGACTGAACTGCAGCGATTCCCTTTCTTGCGG