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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatcttattgctttgtttcttgtgtgcatcagtttatatgctttattcacgtgatatttctgtcccgttattactgacatgtgctaattattataaaag

Basic information

species Glycine max
transcript GLYMA13G29410.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G29410.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv04s0008g00770.t01 (Vitis vinifera), 5'ss of exon 10
GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatcttattgctttgtttcttgtgtgcatcagtttatatgctttattcacgtgatatttctgtcccgttattactgacatgtgctaattattataaaag
||| ||||||| ||||||| |||||| ||||||||| |||||||||| ||||||||||| ||||||||||||||| | |  | | | |||  |  ||| | |    || |   |   | || |   |    ||||     |   ||  | |  | ||||   ||| |         
GGTATTGATGGGGCTCGGGCGGAGAAGATTCTTGACATGGCTTCTATCACCCTCAACAAGAATTCAGTGCCTGgtaa-acttcaatccttcatcccttttatattccactgactcccccttttctccaccttatt-----ctacttgctcc--aaatgttaaaatcacag------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192298535|gb|FG988506.1|FG988506
EST:     GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
genomic: GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|254330688|gb|GR841953.1|GR841953
EST:     GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
genomic: GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|58014729|gb|CX701471.1|CX701471
EST:     GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
genomic: GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|4437020|gb|AI522885.1|AI522885
EST:     GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
genomic: GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|213606991|gb|DB974384.1|DB974384
EST:     GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
genomic: GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|209726322|gb|BW680234.1|BW680234
EST:     GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
genomic: GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|18038805|gb|BM307099.1|BM307099
EST:     CTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
genomic: CTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|213603861|gb|DB982161.1|DB982161
EST:     AAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCAACAGCAA
genomic: AAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|209729808|gb|BW658613.1|BW658613
EST:     GAAAATTCTTGGCTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
genomic: GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|213593328|gb|DB975696.1|DB975696
EST:     GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
genomic: GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|193514366|gb|FK467896.1|FK467896
EST:     GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
genomic: GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|19052654|gb|BM731321.1|BM731321
EST:     GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
genomic: GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|254346600|gb|GR856322.1|GR856322
EST:     GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
genomic: GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|209698391|gb|BW667186.1|BW667186
EST:     GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
genomic: GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|209700551|gb|BW670390.1|BW670390
EST:     GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
genomic: GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|37995170|gb|CF806759.1|CF806759
EST:     GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
genomic: GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|15815903|gb|BI788178.1|BI788178
EST:     GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
genomic: GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|214009429|gb|DB990635.1|DB990635
EST:     GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
genomic: GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|20075616|gb|BQ094399.1|BQ094399
EST:     GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
genomic: GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|58018378|gb|CX705120.1|CX705120
EST:     GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
genomic: GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|209710250|gb|BW681112.1|BW681112
EST:     CCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
genomic: CCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|254335575|gb|GR847103.1|GR847103
EST:     GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
genomic: GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|254345540|gb|GR851702.1|GR851702
EST:     GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
genomic: GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|254333982|gb|GR848900.1|GR848900
EST:     GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
genomic: GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|213597480|gb|DB981648.1|DB981648
EST:     GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
genomic: GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|214009268|gb|DB990600.1|DB990600
EST:     GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
genomic: GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|213594872|gb|DB977214.1|DB977214
EST:     GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
genomic: GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|9819792|gb|BE555305.1|BE555305
EST:     GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
genomic: GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|192301793|gb|FG994445.1|FG994445
EST:     GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
genomic: GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|58023902|gb|CX710643.1|CX710643
EST:     GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
genomic: GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|18735429|gb|BM528760.1|BM528760
EST:     GAAA-TTCTTGACTTGGCTTCTATA-CCCTCAACAAAAAT-CAGTGGCTG                         GTGATAAGAGTGCCCTA
genomic: GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTA
EST: gi|15286064|gb|BI469955.1|BI469955
EST:     GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
genomic: GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|254346462|gb|GR856184.1|GR856184
EST:     GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
genomic: GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|209722222|gb|BW662394.1|BW662394
EST:     GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
genomic: GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|209725263|gb|BW672738.1|BW672738
EST:     GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
genomic: GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|213594045|gb|DB983197.1|DB983197
EST:     TGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCAACAGCAA
genomic: TGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|10254054|gb|BE821820.1|BE821820
EST:     GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
genomic: GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|6454780|gb|AW185463.1|AW185463
EST:     GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
genomic: GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|58014732|gb|CX701474.1|CX701474
EST:     GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
genomic: GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|298186489|gb|HO037122.1|HO037122
EST:     GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCT
genomic: GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCT
EST: gi|209725542|gb|BW677842.1|BW677842
EST:     GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
genomic: GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA