Sequence
atgc intronic sequence ATGC exonic sequenceTTGCCTGCTTGGGATATTCTTGAAGCCATTCCCTTTGTGGTTGATGCTGCTCTTACAGCCTGTGCTCATGGAAGACTGTCTCCACGTGAGTTGGCAACAGgtatgtgtgttttgatcagataaaatccaatgaaacacaccaaatagctagtagaactcttgatctctaaattaccgaagagaattcagtttcaaaattc...
Basic information
species | Glycine max |
transcript | GLYMA13G28070.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G28070.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os07g11000.1 (Oryza sativa), 5'ss of exon 10
TTGCCTGCTTGGGATATTCTTGAAGCCATTCCCTTTGTGGTTGATGCTGCTCTTACAGCCTGTGCTCATGGAAGACTGTCTCCACGTGAGTTGGCAACAGgtatgtgtgttttgatcagataaaatccaatgaaacacaccaaata-gctagtagaactcttgatctctaaattaccgaagag--aattcagtttcaaaattc----------------------------------------------------
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TTACCTGCTTGGGAGATACTGGAAGCTGTTCCATTTGTGGTGGATGCTGCTCTAACTGCCTGTTCCCATGGAAGACTGTTTCCACGAGAACTGGCTACAGgtttgtttttgccgattctttttttttttttttgacgtaaaatttttgccgattcttgtttgaaaattaagatgattgaagagtgaaccttattatttaaccattactatgttctatgtgatcatcagtgtttgatactaccttttccattccag
upper sequence: GLYMA13G28070.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G150754_T01 (Zea mays), 5'ss of exon 10
TTGCCTGCTTGGGATATTCTTGAAGCCATTCCCTTTGTGGTTGATGCTGCTCTTACAGCCTGTGCTCATGGAAGACTGTCTCCACGTGAGTTGGCAACAGgtatgt-gtgttttgatcaga--------taaaatccaatgaaacac----------accaaa--tagctagtagaactcttgatctctaaa--ttaccgaagagaattcagtttcaaaattc-------------------------------
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TTGCCAGCTTGGGAGATACTGGAGGCTGTTCCTTTTGTGGTTGATGCTGCTCTTACTGCTTGTTCCCATGGAAGACTATTTCCACGTGAACTGGCCACAGgtcggttgtgttcagttttaaggcaattttagaaaccagtgctacttttatccgataatcaagagtaaagagtaccaaccgtggcttctaacctttatgttagaaaatgctcattcagggtcagggtgtataactatgtcatctcatttttcag
upper sequence: GLYMA13G28070.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv05s0020g02570.t01 (Vitis vinifera), 5'ss of exon 10
TTGCCTGCTTGGGATATTCTTGAAGCCATTCCCTTTGTGGTTGATGCTGCTCTTACAGCCTGTGCTCATGGAAGACTGTCTCCACGTGAGTTGGCAACAGgtatgtgtgttttgatcagataaaatccaatgaaacacaccaaatagctagtagaactcttgatctctaaattac-cgaagagaattcagtttc----aaaattc
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TTACCTGCATGGGATATCCTGGAAGTTGTACCTTTTGTGGTTGATGCTGCTTTAACAGCCTGTGCCCATGGAAGGCTGTCTCCTCGTGAACTGGCTACAGgtcagtctggtgtc-tcatttcattttttgtgattgttgtgatcta---aatccacattcagagggagacaccacatggattttttttcctttctaataaagtt-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7591044|gb|AW706785.1|AW706785EST: TCTTACAGCCTGTGCTCATGGAAGACTGTCTCCACGTGAGTTGGCAACAG GGCTTAAAGATTTAGCTGATTTTCTTCCTGCATCTCTGGCAACCATAATAA
genomic: TCTTACAGCCTGTGCTCATGGAAGACTGTCTCCACGTGAGTTGGCAACAGgtatgtgtgt ... ttaatatcagGGCTTAAAGATTTAGCTGATTTTCTTCCTGCATCTCTGGCAACCATAATAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGCCTGCTTGGGATATTCTTGAAGCCATTCCCTTTGTGGTTGATGCTGCTCTTACAGCCTGTGCTCATGGAAGACTGTCTCCACGTGAGTTGGCAACAGgtatgtgtgttttgatcagataaaatccaatgaaacacaccaaatagctagtagaactcttgatctctaaattaccgaagagaattcagtttcaaaattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA