Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTTCTACTTCATTGGATTTGGATTGTTCTGCGTTGAAACTTTGATCAGCATTTGGGTTATTCAGgtttgactacacttcttgaactttccaatcatcttaagcacatgcaccagcattttgaatgccatgatttccttatgaattaccacataccaactcactatttctttggtttgctatacag

Basic information

species Glycine max
transcript GLYMA13G25460.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G25460.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os07g37740.1 (Oryza sativa), 5'ss of exon 12
ATCTTCTACTTCATTGGATTTGGATTGTTCTGCGTTGAAACTTTGATCAGCATTTGGGTTATTCAGgtttgac-tacacttcttgaactttccaatcatcttaagc----acatgcaccagcattttgaatgc-catg-atttccttatgaattaccacataccaactcactatttctt-tggtttgctatacag--------------------------------------------------------------------
|||||||||||  |||||||||||||||||||||| ||| | ||| ||||||| |||||||| |||||  | | | |   |    ||   |||   | | | |       | |    | ||||||    ||   |||  |  |  | || |||    |||||       |  |  |||| |  | |   |   ||                                                                    
ATCTTCTACTTTGTTGGATTTGGATTGTTCTGCGTCGAATCATTGCTCAGCATCTGGGTTATCCAGgtcagtcctgcgaataacaaatactccctccgtttcatattataagactttctagcattgcccatattcatatagatgttaataaatctagacatatgtgtctagaaagtcttataatataaaacggagaaagtatgtttttatgaaataaattctcaagtagtctatctgagccgttttgacatttgtgaatgcag

upper sequence: GLYMA13G25460.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os01g57220.1 (Oryza sativa), 5'ss of exon 11
ATCTTCTACTTCATTGGATTTGGATTGTTCTGCGTTGAAACTTTGATCAGCATTTGGGTTATTCAGgtttgact-acacttcttgaactttccaatcatcttaagcacatgcaccagcattttgaatgccatgatttccttatgaattaccacataccaactcactatttctttggtttgctatacag
|| || |||||||||||||||||| |||||||| ||||| |  |  ||||| ||   || || |||||  |  | | |   ||||| |||  | |    |  |     |  |    |  | | |     ||  | | | | ||    | ||    | || |   |                       
ATATTTTACTTCATTGGATTTGGACTGTTCTGCCTTGAATCACTACTCAGCGTTGTTGTCATCCAGgtgagttttataaaacttgatcttagccaaagccaaatagtaacaccttggtgtct-gttcagcaacactccttcatt--ctgccgttcatcatcatgcgtca-------------------

upper sequence: GLYMA13G25460.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G011078_T01 (Zea mays), 5'ss of exon 12
ATCTTCTACTTCATTGGATTTGGATTGTTCTGCGTTGAAACTTTGATCAGCATTTGGGTTATTCAGgtttgactacacttcttgaactttccaatcatcttaagcacatgcaccagcattttgaatgccatgatttccttatgaattaccacataccaactcactatttctttggtttgctatacag
||||||||||||||||| |||| |||||||||| | ||  ||||| | ||| | ||||| ||||||||     ||    |    | |  | || | ||||                  || |  |  || | | ||  || |||| |   | |   |  |   ||                      
ATCTTCTACTTCATTGGCTTTGCATTGTTCTGCCTGGAGGCTTTGCTAAGCGTGTGGGTCATTCAGgtgaagttattactgcctaccgcttcattgatctc---------------tcttcttgacaccttcagttggttctgaactgtaaaagctctgcatcctgcag------------------

upper sequence: GLYMA13G25460.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G011078_T02 (Zea mays), 5'ss of exon 11
----------------------------------ATCTTCTACTTCATTGGATTTGGATTGTTCTGCGTTGAAACTTTGATCAGCATTTGGGTTATTCAGgtttgactacacttcttgaactttccaatcatcttaagcacatgcaccagcattttgaatgccatgatttccttatgaattaccacataccaactcactatttctttggtttgctatacag
                                  ||||||||||||||||| |||| |||||||||| | ||  ||||| | ||| | ||||| ||||||||     ||    |    | |  | || | ||||                  || |  |  || | | ||  || |||| |   | |   |  |   ||                      
TCTTGGATGTTAAAACTATTTTGACAATCTCCAGATCTTCTACTTCATTGGCTTTGCATTGTTCTGCCTGGAGGCTTTGCTAAGCGTGTGGGTCATTCAGgtgaagttattactgcctaccgcttcattgatctc---------------tcttcttgacaccttcagttggttctgaactgtaaaagctctgcatcctgcag------------------

upper sequence: GLYMA13G25460.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G169773_T01 (Zea mays), 5'ss of exon 10
ATCTTCTACTTCATTGGATTTGGATTGTTCTGCGTTGAAACTTTGATCAGCATTTGGGTTATTCAGgtttgactacacttcttgaactttccaatcatcttaagc---acatgcaccagcattt-tgaatgccatgatttccttatgaattaccacataccaactcactatttctttggtttgctatacag---------------------------------------
|| || |||||||||||||||||| |||||||| ||||| |  || |||||||    || ||||||||  |  |    || ||    ||| |  ||     ||     |  || |     |||  | |    |||| | |   | |    | |  ||||    |||  ||  | |    | | ||| |                                          
ATATTTTACTTCATTGGATTTGGAATGTTCTGCCTTGAATCACTGCTCAGCATCGTTGTCATTCAGgtgggtatcatgtttttaccttttgctgtccctagaattctgatgtgtagggatattcattagcaacatggtgtttctgtctcatgcatcataatctctctttaagtttcaattattctagaagagagctgttttgagatattattgttctgaacttgtttcag

upper sequence: GLYMA13G25460.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv00s0301g00030.t01 (Vitis vinifera), 5'ss of exon 12
ATCTTCTACTTCATTGGATTTGGATTGTTCTGCGTTGAAACTTTGATCAGCATTTGGGTTATTCAGgtttgactacacttcttgaactttccaatcatcttaagcacatgcaccagcattttgaatgccatgatttccttatgaattaccacataccaactc-actatttc-tttggtttgctatacag
||||||||||||||||| |||||| ||||||| |||||| |  || ||||||| ||||||||||||||   ||| | |||    |  || | ||| |||      |      | | |  |   |||   |||| |     |     |       ||    ||   | ||||   ||||||||       
ATCTTCTACTTCATTGGGTTTGGAATGTTCTGTGTTGAATCAGTGCTCAGCATCTGGGTTATTCAGgtccaacttctctttccca--ttcctaataatcacggaaagcatagctacctctgctaataggatgaatcatgca---gctcttgttcactgtttctgttgtttcacctggtttgcag-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7638999|gb|AW733331.1|AW733331
EST:     CTGCGTTGAAACTTTGATCAGCATTTGGGTTATTCAG                         CAAGTATACATGTACTTCCGCGGCAGTGGGAAGGCCGCTGAGATGAAACGG
genomic: CTGCGTTGAAACTTTGATCAGCATTTGGGTTATTCAGgtttgactac ... tgctatacagCAAGTATACATGTACTTCCGCGGCAGTGGGAAGGCCGCTGAGATGAAACGG
EST: gi|7589230|gb|AW705008.1|AW705008
EST:     GATTTGGATTGTTCTGCGTTGAAACTTTGATCAGCATTTGGGTTATTCAG                         CAAGTATACATGTACTTCCGCGGCAGTGGGAAGGCCGCTGAGATGAAACGG
genomic: GATTTGGATTGTTCTGCGTTGAAACTTTGATCAGCATTTGGGTTATTCAGgtttgactac ... tgctatacagCAAGTATACATGTACTTCCGCGGCAGTGGGAAGGCCGCTGAGATGAAACGG