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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAACAAGATTAGCACCCAAACTGGTATTGGAACAGCCATTGCAATTGCTGGTGTGGCACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGAAAAGCGAgtgagtattgtcttaatttatttgtaccataactgcatattaaattggttgaaacttgaaaagttattgttcattcgcaagtataaaccactttctgcgt...

Basic information

species Glycine max
transcript GLYMA13G24360.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G24360.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv10s0003g00300.t01 (Vitis vinifera), 5'ss of exon 11
TAACAAGATTAGCACCCAAACTGGTATTGGAACAGCCATTGCAATTGCTGGTGTGGCACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGAAAAGCGAgtgagtattgtcttaatttatt-tgtaccataactgcatattaaattggttgaaacttgaaaagttattgttcattcgcaagtataaaccactttctgcgt--
||||||||||   || ||||||||||||||||||  | ||||||||||||| |||||| | ||||| ||||| || ||||  ||||| || || || ||||||||| ||||  |   ||||    ||   | | |  | |||||| |    ||   || |||||  |||    |||     |  ||      |   |   |  
TAACAAGATTTCAACACAAACTGGTATTGGAACATGCGTTGCAATTGCTGGAGTGGCAATGTACTCTTTCATAAAGGCCAAGATGGAAGAGGAGAAACGAgtgagttttgttctgcattataacctaagttcagtcaaaattaaaatcaaagatggtttaaaaga-atttaaaattttt--gcttagtttgttgcttatatgc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5753077|gb|AI960364.1|AI960364
EST:     GTGTGGCACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGAAAAGCGA                         CAAGCAAAAGCAGCATAAGAGGAAAGTCGTCAACCTGGAGGATGTCTTGCA
genomic: GTGTGGCACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGAAAAGCGAgtgagtattg ... ttcttgtcagCAAGCAAAAGCAGCATAAGAGGAAAGTCGTCAACCTGGAGGATGTCTTGCA
EST: gi|193681309|gb|FK622023.1|FK622023
EST:     GTGTGGCACTCTACTCGTTCATCAAAGCCTGAATGGAGGAAGAAAAGCGA                         CAAGCAAAAGCAGCATAAGAGGAAAGTCG
genomic: GTGTGGCACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGAAAAGCGAgtgagtattg ... ttcttgtcagCAAGCAAAAGCAGCATAAGAGGAAAGTCG
EST: gi|193417392|gb|FK383868.1|FK383868
EST:     GTGGCACTCTACTCGTTCATCAAAGCCAAGAATGGAGGAAGAAAAAGCGA                         CAAGCAAAAGCAGCATAAGAGGAAAAGTCGTCAACCTGGAGGATGT
genomic: GTGGCACTCTACTCGTTCATCAAAGCCA-GAATGGAGGAAGAAAA-GCGAgtgagtattg ... ttcttgtcagCAAGCAAAAGCAGCATAAGAGGAAA-GTCGTCAACCTGGAGGATGT
EST: gi|9903135|gb|BE612103.1|BE612103
EST:     GTGTGGCACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGAAAAGCGA                         CAAGCAAAAGCAGCATAAGAGGAAAGTCGTCAACCTG
genomic: GTGTGGCACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGAAAAGCGAgtgagtattg ... ttcttgtcagCAAGCAAAAGCAGCATAAGAGGAAAGTCGTCAACCTG
EST: gi|207835871|gb|GD806554.1|GD806554
EST:     GTGTGGCACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGAAAAGCGA                         CAAGCAAAAGCAGCATAAGAGGAAAGTCG
genomic: GTGTGGCACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGAAAAGCGAgtgagtattg ... ttcttgtcagCAAGCAAAAGCAGCATAAGAGGAAAGTCG
EST: gi|6134862|gb|AW133255.1|AW133255
EST:     GTGTGGCACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGAAAAGCGA                         CAAGCAAAAGCAGCATAA
genomic: GTGTGGCACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGAAAAGCGAgtgagtattg ... ttcttgtcagCAAGCAAAAGCAGCATAA
EST: gi|193305382|gb|FK271341.1|FK271341
EST:     GTGTGGCACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGAAAAGCGA                         CAAGCAAAAGCAGCATAAGAGGAAAGTCGTCAACCTGGAGGATGTCTTGCA
genomic: GTGTGGCACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGAAAAGCGAgtgagtattg ... ttcttgtcagCAAGCAAAAGCAGCATAAGAGGAAAGTCGTCAACCTGGAGGATGTCTTGCA
EST: gi|208264750|gb|GE062124.1|GE062124
EST:     GTGTGGCACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGAAAAGCGA                         CAAGCAAAAGCAGCATAAGA
genomic: GTGTGGCACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGAAAAGCGAgtgagtattg ... ttcttgtcagCAAGCAAAAGCAGCATAAGA
EST: gi|9440042|gb|BE440553.1|BE440553
EST:     GTGTGGCACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGAAAAGCGA                         CAAGCAAAAGCAGCATAAGAGGAAAGTCGTCAACCTGGAGGATGTCTTGCA
genomic: GTGTGGCACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGAAAAGCGAgtgagtattg ... ttcttgtcagCAAGCAAAAGCAGCATAAGAGGAAAGTCGTCAACCTGGAGGATGTCTTGCA
EST: gi|20812531|gb|BQ297009.1|BQ297009
EST:     GTGTGGCACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGAAAAGCGA                         CAAGCAAAAGCAGCATAAGAGGAAAGTCGTCAACCTGGAGGATGTCTTGCA
genomic: GTGTGGCACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGAAAAGCGAgtgagtattg ... ttcttgtcagCAAGCAAAAGCAGCATAAGAGGAAAGTCGTCAACCTGGAGGATGTCTTGCA
EST: gi|207706795|gb|GD687063.1|GD687063
EST:     GTGTGGCACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGAAAAGCGA                         CAAGCAAAAGCAGCATAAGAGGAAAGTCGTCAACCTGGAGGATGTCTTGCA
genomic: GTGTGGCACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGAAAAGCGAgtgagtattg ... ttcttgtcagCAAGCAAAAGCAGCATAAGAGGAAAGTCGTCAACCTGGAGGATGTCTTGCA
EST: gi|19053945|gb|BM732612.1|BM732612
EST:     GTGTGGCACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGAAAAGCGA                         CAAGCAAAAGCAGCATAAGAGGAAAGTCGTCAACCTGGAGGATGTCTTGCA
genomic: GTGTGGCACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGAAAAGCGAgtgagtattg ... ttcttgtcagCAAGCAAAAGCAGCATAAGAGGAAAGTCGTCAACCTGGAGGATGTCTTGCA
EST: gi|7692256|gb|AW760367.1|AW760367
EST:     GTGTGGCACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGAAAAGCGA                         CAAGCAAAAGCAGCATAAGAGGAAAGTCGTCAACCTGGAGGATGTCTTGCA
genomic: GTGTGGCACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGAAAAGCGAgtgagtattg ... ttcttgtcagCAAGCAAAAGCAGCATAAGAGGAAAGTCGTCAACCTGGAGGATGTCTTGCA
EST: gi|17519168|gb|BM188210.1|BM188210
EST:     GTGTGGCACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGAAAAGCGA                         CAAGCAAAAGCAGCATAAGAGGAAAGTCGTCAACCTGGAGGATGTCTTGCA
genomic: GTGTGGCACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGAAAAGCGAgtgagtattg ... ttcttgtcagCAAGCAAAAGCAGCATAAGAGGAAAGTCGTCAACCTGGAGGATGTCTTGCA
EST: gi|9903168|gb|BE612136.1|BE612136
EST:     GTGTGGCACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGACAAGCGA                         CAAGCAAAAGCAGCA
genomic: GTGTGGCACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGAAAAGCGAgtgagtattg ... ttcttgtcagCAAGCAAAAGCAGCA
EST: gi|193341828|gb|FK308916.1|FK308916
EST:     TGTGGACACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGAAAAGCGA                         CAAGCAAAAGCAGCATAAGAGGAAAGTCGTCAACCTGGAGGATGTCTTGCA
genomic: TGTGG-CACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGAAAAGCGAgtgagtattg ... ttcttgtcagCAAGCAAAAGCAGCATAAGAGGAAAGTCGTCAACCTGGAGGATGTCTTGCA
EST: gi|5677127|gb|AI938257.1|AI938257
EST:     GTGTGGCACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGAAAAGCGA                         CAAGCAAAAGCAGCATAAGAGGAAAGTCGTCAACCTGGAGGATGTCTTGCA
genomic: GTGTGGCACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGAAAAGCGAgtgagtattg ... ttcttgtcagCAAGCAAAAGCAGCATAAGAGGAAAGTCGTCAACCTGGAGGATGTCTTGCA
EST: gi|7690957|gb|AW759092.1|AW759092
EST:     GTGTGGCACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGAAAAGCGA                         CAAGCAAAAGCAGCATAAGAGGAAAGTCGTCAACCT
genomic: GTGTGGCACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGAAAAGCGAgtgagtattg ... ttcttgtcagCAAGCAAAAGCAGCATAAGAGGAAAGTCGTCAACCT
EST: gi|193700779|gb|FK635590.1|FK635590
EST:     GTGTGGCACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGAAAAGCGA                         CAAGCAAAAGCAGCATAAGAGGAAAGTCGTCAACCTGGAGGATGTCTTGAC
genomic: GTGTGGCACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGAAAAGCGAgtgagtattg ... ttcttgtcagCAAGCAAAAGCAGCATAAGAGGAAAGTCGTCAACCTGGAGGATGTCTTG-C
EST: gi|10845091|gb|BF068262.1|BF068262
EST:     GTGTGGCACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGAAAAGCGA                         CAAGCAAAAGCAGCGTAAGAGGAAAGTCGTCAACCTGTAGGATGTCTTGCA
genomic: GTGTGGCACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGAAAAGCGAgtgagtattg ... ttcttgtcagCAAGCAAAAGCAGCATAAGAGGAAAGTCGTCAACCTGGAGGATGTCTTGCA
EST: gi|15000011|gb|BI320825.1|BI320825
EST:     GTGTGGCACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGAAAAGCGA                         CAAGCAAAAGCAGCATAAGAGGAAAGTCGTCAACCTGGAGGATGTCTTGCA
genomic: GTGTGGCACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGAAAAGCGAgtgagtattg ... ttcttgtcagCAAGCAAAAGCAGCATAAGAGGAAAGTCGTCAACCTGGAGGATGTCTTGCA
EST: gi|208076403|gb|GD874324.1|GD874324
EST:     GTGTGGCACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGAAAAGCGA                         CAAGCAAAAGCAGCATAAGA
genomic: GTGTGGCACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGAAAAGCGAgtgagtattg ... ttcttgtcagCAAGCAAAAGCAGCATAAGA
EST: gi|5753079|gb|AI960366.1|AI960366
EST:     GTGTGGCACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGAAAAGCGA                         CAAGCAAAAGCAGCATAAGAGGAAAGTCGTCAACCTGGAGGATGTCTTGCA
genomic: GTGTGGCACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGAAAAGCGAgtgagtattg ... ttcttgtcagCAAGCAAAAGCAGCATAAGAGGAAAGTCGTCAACCTGGAGGATGTCTTGCA
EST: gi|208202709|gb|GE001777.1|GE001777
EST:     GTGTGGCACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGAAAAGCGA                         CAAGCAAAAGCAGCATAAGAGGAAAGTCGTCAACCTGGAGGATGTCTTGCA
genomic: GTGTGGCACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGAAAAGCGAgtgagtattg ... ttcttgtcagCAAGCAAAAGCAGCATAAGAGGAAAGTCGTCAACCTGGAGGATGTCTTGCA
EST: gi|23057431|gb|BU578105.1|BU578105
EST:     GTGTGGCACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGAAAAGCGA                         CAAGCAAAAGCAGCATAAGAGGAAAGTCGTCAACCTGGAGGATGTCTTGCA
genomic: GTGTGGCACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGAAAAGCGAgtgagtattg ... ttcttgtcagCAAGCAAAAGCAGCATAAGAGGAAAGTCGTCAACCTGGAGGATGTCTTGCA
EST: gi|21675723|gb|BQ628074.1|BQ628074
EST:     GTGTGGCACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGAAAAGCGA                         CAAGCAAAAGCAGCATAAGAGGAAAGTCGTCAACCTGGAGGATGTCTTGCA
genomic: GTGTGGCACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGAAAAGCGAgtgagtattg ... ttcttgtcagCAAGCAAAAGCAGCATAAGAGGAAAGTCGTCAACCTGGAGGATGTCTTGCA
EST: gi|6482509|gb|AW201766.1|AW201766
EST:     GTGTGGCACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGAAAAGCGA                         CAAGCAAAAGCAGCATAAGAGGAAAGTCGTCAACCTGGAGGATGTCTTGCA
genomic: GTGTGGCACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGAAAAGCGAgtgagtattg ... ttcttgtcagCAAGCAAAAGCAGCATAAGAGGAAAGTCGTCAACCTGGAGGATGTCTTGCA
EST: gi|7691830|gb|AW759950.1|AW759950
EST:     GTGTGGCACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGAAAAGCGA                         CAAGCAAAAGCAGCATAAGAGGAAAGTCGTCAACCTGGAGGATGTCTTGCA
genomic: GTGTGGCACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGAAAAGCGAgtgagtattg ... ttcttgtcagCAAGCAAAAGCAGCATAAGAGGAAAGTCGTCAACCTGGAGGATGTCTTGCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TAACAAGATTAGCACCCAAACTGGTATTGGAACAGCCATTGCAATTGCTGGTGTGGCACTCTACTCGTTCATCAAAGCCAGAATGGAGGAAGAAAAGCGAgtgagtattgtcttaatttatttgtaccataactgcatattaaattggttgaaacttgaaaagttattgttcattcgcaagtataaaccactttctgcgt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA