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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATTACTAAACAAGGTCCCCTTTCCACTACCTGTTCCTGAGATATTAAATCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATGgtaagtttctttatttgatcataaggtcattttttttctcgagacattatagaactgtgtctcttatgtcccacattttttgtttgatgaaatttgcag

Basic information

species Glycine max
transcript GLYMA13G18950.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G18950.2 (Glycine max), 5'ss of exon 11
lower sequence: Vv07s0005g04440.t01 (Vitis vinifera), 5'ss of exon 11
ATATTACTAAACAAGGTCCCCTTTCCACTACCTGTTCCTGAGATATTAAATCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATGgtaagtttctttattt-------gatcataaggtcattttttttct-cgagacattatagaactgtgtctcttatg--tcccacattttttgtttg-----atgaaatttgcag---------
|||||||||||||| || || |||||| |||||  |||||   |||| |||||||||  |||| | ||||| ||| ||||||| || |||||||||||||||  || |  |  |||       |||| ||   || || ||||  |   ||| || |   |||| |  |  |||||  |  | |||| |||  |||     || |  ||||  |         
ATATTACTAAACAAAGTTCCATTTCCATTACCTACTCCTGGTCTATTCAATCTGGATCTGATCAATGCTTTTACTTCAGATACGGTCGTTTCAGAAAATGgttggtatagtagttttaagcgagatcttaccatctttcttttaatgtcagatatgaataaacttttccggttatggttgtctcattctttcattgcctccattatttttggtggtattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209703803|gb|BW670712.1|BW670712
EST:     TCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATG                         CTTTGACTTTCAATGATCTTGGAATTGTTCCTCACAAGCTGAAGGGATACC
genomic: TCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATGgtaagtttct ... aaatttgcagCTTTGACTTTCAATGATCTTGGAATTGTTCCTCACAAGCTGAAGGGATACC
EST: gi|16344888|gb|BI970483.1|BI970483
EST:     TCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATG                         CTTTGACTTTCAATGATCTTGGAATTGTTCCTCACAAGCTGAAGGGATACC
genomic: TCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATGgtaagtttct ... aaatttgcagCTTTGACTTTCAATGATCTTGGAATTGTTCCTCACAAGCTGAAGGGATACC
EST: gi|58018297|gb|CX705039.1|CX705039
EST:     TCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATG                         CTTTGACTTTCAATGATCTTGGAATTGTTCCTCACAAGCTGAAGGGATACC
genomic: TCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATGgtaagtttct ... aaatttgcagCTTTGACTTTCAATGATCTTGGAATTGTTCCTCACAAGCTGAAGGGATACC
EST: gi|213595511|gb|DB977919.1|DB977919
EST:     TCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATG                         CTTTGACTTTCAATGATCTTGGAATTGTTCCTCACAAGCTGAAGGGATACC
genomic: TCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATGgtaagtttct ... aaatttgcagCTTTGACTTTCAATGATCTTGGAATTGTTCCTCACAAGCTGAAGGGATACC
EST: gi|308222711|gb|HO760621.1|HO760621
EST:     TCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATG                         CTTTGACTTTCAATGATCTTGGAATTGTTCCTCACAAGCTGAAGGGATACC
genomic: TCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATGgtaagtttct ... aaatttgcagCTTTGACTTTCAATGATCTTGGAATTGTTCCTCACAAGCTGAAGGGATACC
EST: gi|209718616|gb|BW662708.1|BW662708
EST:     TCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATG                         CTTTGACTTTCAATGATCTTGGAATTGTTCCTCACAAGCTGAAGGGATACC
genomic: TCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATGgtaagtttct ... aaatttgcagCTTTGACTTTCAATGATCTTGGAATTGTTCCTCACAAGCTGAAGGGATACC
EST: gi|7925775|gb|AW831801.1|AW831801
EST:     TCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATG                         CTTTGACTTTCAATGATCTTGGAATTGTTCCTCACAAGCTGAAGGGATACC
genomic: TCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATGgtaagtttct ... aaatttgcagCTTTGACTTTCAATGATCTTGGAATTGTTCCTCACAAGCTGAAGGGATACC
EST: gi|58015889|gb|CX702631.1|CX702631
EST:     TCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATG                         CTTTGACTTTCAATGATCTTGGAATTGTTCCTCACAAGCTGAAGGGATACC
genomic: TCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATGgtaagtttct ... aaatttgcagCTTTGACTTTCAATGATCTTGGAATTGTTCCTCACAAGCTGAAGGGATACC
EST: gi|10232656|gb|BE801544.1|BE801544
EST:     TCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATG                         CTTTGACTTTCAATGATCTTGGAATTGTTCCTCACAAGCTGAAGGGATACC
genomic: TCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATGgtaagtttct ... aaatttgcagCTTTGACTTTCAATGATCTTGGAATTGTTCCTCACAAGCTGAAGGGATACC
EST: gi|254347888|gb|GR854137.1|GR854137
EST:     TCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATG                         CTTTGACTTTCAATGATCTTGGAATTGTTCCTCACAAGCTGAAGGGATACC
genomic: TCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATGgtaagtttct ... aaatttgcagCTTTGACTTTCAATGATCTTGGAATTGTTCCTCACAAGCTGAAGGGATACC
EST: gi|58016827|gb|CX703569.1|CX703569
EST:     TCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATG                         CTTTGACTTTCAATGATCTTGGAATTGTTCCTCACAAGCTGAAGGGATACC
genomic: TCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATGgtaagtttct ... aaatttgcagCTTTGACTTTCAATGATCTTGGAATTGTTCCTCACAAGCTGAAGGGATACC
EST: gi|58015071|gb|CX701813.1|CX701813
EST:     TCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATG                         CTTTGACTTTCAATGATCTTGGAATTGTTCCTCACAAGCTGAAGGGATACC
genomic: TCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATGgtaagtttct ... aaatttgcagCTTTGACTTTCAATGATCTTGGAATTGTTCCTCACAAGCTGAAGGGATACC
EST: gi|192298922|gb|FG987667.1|FG987667
EST:     TCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATG                         CTTTGACTTTCAATGATCTTGGAATTGTTCCTCACAAGCTGAAGGGATACC
genomic: TCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATGgtaagtttct ... aaatttgcagCTTTGACTTTCAATGATCTTGGAATTGTTCCTCACAAGCTGAAGGGATACC
EST: gi|209714365|gb|BW677065.1|BW677065
EST:     TCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATG                         CTTTGACTTTCAATGATCTTGGAATTGTTCCTCACAAGCTGAAGGGATACC
genomic: TCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATGgtaagtttct ... aaatttgcagCTTTGACTTTCAATGATCTTGGAATTGTTCCTCACAAGCTGAAGGGATACC
EST: gi|193536460|gb|FK489210.1|FK489210
EST:     TCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATG                         CTTTGACTTTCAATGATCTTGGAATTGTTCCTCACAAGCTGAAGGGAATAC
genomic: TCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATGgtaagtttct ... aaatttgcagCTTTGACTTTCAATGATCTTGGAATTGTTCCTCACAAGCTGAAGGGA-TAC
EST: gi|192301727|gb|FG997641.1|FG997641
EST:     TCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATG                         CTTTGACTTTCAATGATCTTGGAATTGTTCCTCACAAGCTGAAGGAATACC
genomic: TCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATGgtaagtttct ... aaatttgcagCTTTGACTTTCAATGATCTTGGAATTGTTCCTCACAAGCTGAAGGGATACC
EST: gi|193434432|gb|FK401130.1|FK401130
EST:     TCTGGANAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATG                         CTTTGACTTTCAATGATCTTGGAATTGTTCCTCACAAGCTGAAGGGATACC
genomic: TCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATGgtaagtttct ... aaatttgcagCTTTGACTTTCAATGATCTTGGAATTGTTCCTCACAAGCTGAAGGGATACC
EST: gi|192316340|gb|FK011685.1|FK011685
EST:     TCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATG                         CTTTGACTTTCAATGATCTTGGAATTGTTCCTCACAAGCTGAAGGGATACC
genomic: TCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATGgtaagtttct ... aaatttgcagCTTTGACTTTCAATGATCTTGGAATTGTTCCTCACAAGCTGAAGGGATACC
EST: gi|192327146|gb|FK015538.1|FK015538
EST:     TCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATG                         CTTTGACTTTCAATGATCTTGGAATTGTTCCTCACAAGCTGAAGGGATACC
genomic: TCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATGgtaagtttct ... aaatttgcagCTTTGACTTTCAATGATCTTGGAATTGTTCCTCACAAGCTGAAGGGATACC
EST: gi|208207915|gb|GE002908.1|GE002908
EST:     TCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATG                         CTTTGACTTTCAATGATCTTGG
genomic: TCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATGgtaagtttct ... aaatttgcagCTTTGACTTTCAATGATCTTGG
EST: gi|15661683|gb|BI699054.1|BI699054
EST:     TCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATG                         CTTTGACTTTCAATGATCTTGGAATTGTTCCTCACAAGCTGAAGGGATACC
genomic: TCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATGgtaagtttct ... aaatttgcagCTTTGACTTTCAATGATCTTGGAATTGTTCCTCACAAGCTGAAGGGATACC
EST: gi|209709596|gb|BW661923.1|BW661923
EST:     TCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATG                         CTTTGACTTTCAATGATCTTGGAATTGTTCCTCACAAGCTGAAGGGATACC
genomic: TCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATGgtaagtttct ... aaatttgcagCTTTGACTTTCAATGATCTTGGAATTGTTCCTCACAAGCTGAAGGGATACC
EST: gi|192316341|gb|FK011686.1|FK011686
EST:     TCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATG                         CTTTGACTTTCAATGATCTTGGAATTGTTCCTCACAAGCTGAAGGGATACC
genomic: TCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATGgtaagtttct ... aaatttgcagCTTTGACTTTCAATGATCTTGGAATTGTTCCTCACAAGCTGAAGGGATACC
EST: gi|254323287|gb|GR840092.1|GR840092
EST:     TCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATG                         CTTTGACTTTCAATGATCTTGGAATTGTTCCTCACAAGCTGAAGGGATACC
genomic: TCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATGgtaagtttct ... aaatttgcagCTTTGACTTTCAATGATCTTGGAATTGTTCCTCACAAGCTGAAGGGATACC
EST: gi|8669762|gb|BE190869.1|BE190869
EST:     TCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATG                         CTTTGACTCTCAATGATCTTGGAATTGTTCCTCACAAGCTGAAGGGATACC
genomic: TCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATGgtaagtttct ... aaatttgcagCTTTGACTTTCAATGATCTTGGAATTGTTCCTCACAAGCTGAAGGGATACC