Sequence
atgc intronic sequence ATGC exonic sequenceATGCTTTCATCTAAGGACTTGAATTTTGTTGGATACACTTACAAGAACTTTGAAATTGTCAATGATTATCAAGTTCCTGGGATAGgtacatctcttttttctcttttcactgctacaagttgttttatgttaatatgtttgccaggaggttctatttttgctatgttcatggctattatgcttgt...
Basic information
species | Glycine max |
transcript | GLYMA13G18670.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G18670.2 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os10g33640.1 (Oryza sativa), 5'ss of exon 11
ATGCTTTCATCTAAGGACTTGAATTTTGTTGGATACACTTACAAGAACTTTGAAATTGTCAATGATTATCAAGTTCCTGGGATAGgtacatctcttttttctcttttcactgctacaagttgttttatgttaatatgtttgccagga--ggttctatttttgctatgttcatggctattatgcttgt
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ATGCTGTCTTCAAAGGATTTGAATTTTGTGGGCTACACGTACAAGAACTTCGAACTTGTGAATGATCCTGAAGTACTTGGAATGGgtac-tctactccccatcttctcaataagtaaccatgtttctttctcgagaatatcatagtaccagtgcaaacctaatgacatagagcatgtctcttccag-
upper sequence: GLYMA13G18670.2 (Glycine max), 5'ss of exon 11
lower sequence: Vv07s0005g03690.t01 (Vitis vinifera), 5'ss of exon 11
ATGCTTTCATCTAAGGACTTGAATTTTGTTGGATACACTTACAAGAACTTTGAAATTGTCAATGATTATCAAGTTCCTGGGATAGgtacatctcttttttctcttt-tcactgctacaagttgttttatgttaatatgtttgccag--gaggttctatttttgctatgttcatggctattatgcttgt
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ATGCTTTCATCGAAGGACATGAACTTTGTGGGTTATACGTATAAGAACTTTGAAATCATCAATGATTATCAAGTTCCTGGAATGGgtatatatttgtgccttatttatttcatctttctgttagatagacttggtataggtgtgagttgtgggtgtctgtaagcattgtttgtg-ctttactgcca--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|51335217|gb|CO979083.1|CO979083EST: CACTTACAAGAACTTTGAAATTGTCAATGATTATCAAGTTCCTGGGATAG CTGAACTGAAGAAGAAACAGTCCAAACCAAAGAGGCCAACCATCAAGTCAC
genomic: CACTTACAAGAACTTTGAAATTGTCAATGATTATCAAGTTCCTGGGATAGgtacatctct ... tgcctcacagCTGAACTGAAGAAGAAACAGTCCAAACCAAAGAGGCCAACCATCAAGTCAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGCTTTCATCTAAGGACTTGAATTTTGTTGGATACACTTACAAGAACTTTGAAATTGTCAATGATTATCAAGTTCCTGGGATAGgtacatctcttttttctcttttcactgctacaagttgttttatgttaatatgtttgccaggaggttctatttttgctatgttcatggctattatgcttgt
- - - - - - - - - - - - - - - - - - - - - AAGAAC