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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAAATTTGCATTTCTATCACTGGGCCGTCCTGAGTACCTTCAAGATTCTGACGTTGTATCCAGTCGTTTTCAGgttgagacttcattgtaattttttttcttaaaaagttatccactgtattcatgtttttatttgtgattacattgcacttgttttggtatcctatgatag

Basic information

species Glycine max
transcript GLYMA13G16040.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G16040.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv06s0009g00960.t01 (Vitis vinifera), 5'ss of exon 30
TGGAAATTTGCATTTCTATCACTGGGCCGTCCTGAGTACCTTCAAGATTCTGACGTTGTATCCAGTCGTTTTCAGgttgagacttcattgtaattttttttcttaaaaagttatccactgtattcatgtttttatttgtgattacattgcacttgttttggtatcctatgatag----
||||  ||||| ||||| ||||| || || || |||||||||||||| |||||| |||| |||||||||||||||||   |       |||  ||| | |   | |||   |||      | | | | | ||||||| |  |||  ||  | || |||    || |  |   |     
TGGAGGTTTGCCTTTCTTTCACTAGGTCGCCCAGAGTACCTTCAAGACTCTGACATTGTCTCCAGTCGTTTTCAGgtgtgg-------tgtg-tttgtgtgtatgaaatcatattgggcatttgcttttatttatttatttttat-ttttatttttttgaacattcacttgcaaacag

upper sequence: GLYMA13G16040.1 (Glycine max), 5'ss of exon 11
lower sequence: PP1S123_138V6.1 (Physcomitrella patens), 5'ss of exon 30
TGGAAATTTGCATTTCTATCACTGGGCCGTCCTGAGTACCTTCAAGATTCTGACGTTGTATCCAGTCGTTTTCAGgttgagacttcattgtaat--tttttttcttaaaaagttatcc---actgtattcatgtttttatttgtgattacattgcacttgttttggtatcctatgatag----------------------------------------
||||| ||||| ||||| ||||||||||| |||||||| |||||||||   || |||||  |    |||||||||||  |  | | | |  |||  | |  | ||||  |  ||   |   | ||| |        | | ||  | |    || ||    || |   |||  ||  |                                          
TGGAAGTTTGCGTTTCTTTCACTGGGCCGACCTGAGTATCTTCAAGATGGAGATGTTGTTGCTGCCCGTTTTCAGgt--aagcctgagtaaaatgatctgctacttattatttttagcgggattgtttgtcatccctcagttaggttagtgttacatagcttattaaatcaaatcgtttcatctttattgatttctgatcggttggttatgtgatttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58015534|gb|CX702276.1|CX702276
EST:     GCCGTCNTGAGTACCTTCAAGATTCTGACGTTGTATCCAGTCGTTTTCAG                         AGAAGAGATGTTTATGGTGCTTGGGAGCAATATCTTGGCTTGGAGCATACT
genomic: GCCGTCCTGAGTACCTTCAAGATTCTGACGTTGTATCCAGTCGTTTTCAGgttgagactt ... cctatgatagAGAAGAGATGTTTATGGTGCTTGGGAGCAATATCTTGGCTTGGAGCATACT
EST: gi|58015738|gb|CX702480.1|CX702480
EST:     GCCGTCCTGAGTACCTTCAAGATTCTGACGTTGTATCCAGTCGTTTTCAG                         AGAAGAGATGTTTATGGTGCTTGGGAGCAATATCTTGGCTTGGAGCATACT
genomic: GCCGTCCTGAGTACCTTCAAGATTCTGACGTTGTATCCAGTCGTTTTCAGgttgagactt ... cctatgatagAGAAGAGATGTTTATGGTGCTTGGGAGCAATATCTTGGCTTGGAGCATACT
EST: gi|209699336|gb|BW664055.1|BW664055
EST:     AAGATTCTGACGTTGTATCCAGTCGTTTNCAG                         AGAAGAGATGTTTATGGTGCTTGGGAGCAATATCTTGGCTTGGAGCATACT
genomic: AAGATTCTGACGTTGTATCCAGTCGTTTTCAGgttgagactt ... cctatgatagAGAAGAGATGTTTATGGTGCTTGGGAGCAATATCTTGGCTTGGAGCATACT
EST: gi|57573985|gb|CX546960.1|CX546960
EST:     GCCGTCCTGAGTACCTTCAAGATTCTGACGTTGTATCCAGTCGTTTTCAG                         AGAAGAGATGTTTATGGTGCTTGGGAGCAATATCTTGGCTTGGAGCATACT
genomic: GCCGTCCTGAGTACCTTCAAGATTCTGACGTTGTATCCAGTCGTTTTCAGgttgagactt ... cctatgatagAGAAGAGATGTTTATGGTGCTTGGGAGCAATATCTTGGCTTGGAGCATACT