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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGCATCATTTGGTTATCCTGGGGGCCCCATTCTGTTTAAGAATTTGAACTTTGGGATTGATCTCGACAGTCGTATTGCAAgtaagaatatgcttatcttatcctagtcccaagaatgatttttctctcatgccttttgaatccttgttgtattatagatagatattttggttcaatttat...

Basic information

species Glycine max
transcript GLYMA13G10530.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G10530.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv02s0025g02160.t01 (Vitis vinifera), 5'ss of exon 12
TGATGCATCATTTGGTTATCCTGGGGGCCCCATTCTGTTTAAGAATTTGAACTTTGGGATTGATCTCGACAGTCGTATTGCAAgtaagaatatgcttatcttatcctag--tcccaagaatgatttttctctcatgccttttgaatccttgttgtattatagatagatattttggttcaatttat
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TGATGCATCATTTGGTTATCCTGGGGGCCCCTTATTATTTAAGAATTTGAATTTTGGGATAGATCTAGACAGCCGCATTGCAAgtaagaat-tgttttttgaatctcaaatttccatttatagaataacaccattagatgctggatgcttat-gtctcaagtctcaatactgcactttccctact
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192303877|gb|FG998229.1|FG998229
EST:     CCTGTTTAAGAATTTGAACTTTGGGATTGATCTCGACAGTCGTATTGCAA                         TGGTTGGACCAAATGGTATTGGCAAATCAACTATA
genomic: TCTGTTTAAGAATTTGAACTTTGGGATTGATCTCGACAGTCGTATTGCAAgtaagaatat ... atgtttgcagTGGTTGGACCAAATGGTATTGGCAAATCAACTATA
EST: gi|58024671|gb|CX711412.1|CX711412
EST:     TCTGTTTAAGAATTTGAACTTTGGGATTGATCTCGACAGTCGTATTGCAA                         TGGTTGGACCAAATGGTATTGGCAAATCAACTATACTTAAGTTAATTGCTG
genomic: TCTGTTTAAGAATTTGAACTTTGGGATTGATCTCGACAGTCGTATTGCAAgtaagaatat ... atgtttgcagTGGTTGGACCAAATGGTATTGGCAAATCAACTATACTTAAGTTAATTGCTG
EST: gi|57576024|gb|CX548995.1|CX548995
EST:     TCTGTTTAAGAATTTGAACTTTGGGATTGATCTCGACAGTCGTATTGCAA                         TGGTTGGACCAAATGGTATTGGCAAATCAACTATACTTAAGTTAATTGCTG
genomic: TCTGTTTAAGAATTTGAACTTTGGGATTGATCTCGACAGTCGTATTGCAAgtaagaatat ... atgtttgcagTGGTTGGACCAAATGGTATTGGCAAATCAACTATACTTAAGTTAATTGCTG
EST: gi|208055506|gb|GD853271.1|GD853271
EST:     TCTGTTTAAGAATTTGAACTTTGGGATTGATCTCGACAGTCGTATTGCAA                         TGGTTGGACCAAATGGTATTGGCAAATCAACTATACTTAAGTTAATTGCTG
genomic: TCTGTTTAAGAATTTGAACTTTGGGATTGATCTCGACAGTCGTATTGCAAgtaagaatat ... atgtttgcagTGGTTGGACCAAATGGTATTGGCAAATCAACTATACTTAAGTTAATTGCTG
EST: gi|208061301|gb|GD857993.1|GD857993
EST:     TCTGTTTAAGAATTTGAACTTTGGGATTGATCTCGACAGTCGTATTGCAA                         TGGTTGGACCAAATGG
genomic: TCTGTTTAAGAATTTGAACTTTGGGATTGATCTCGACAGTCGTATTGCAAgtaagaatat ... atgtttgcagTGGTTGGACCAAATGG