1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTCAACTCCTTTTCTCGTTGTGCTCCCAATACTAACCATATGGTTCCATAGGTACTGCAAAGGCCGTTTTGAATCAGCATTTGTTAAATTTCCCTTACAGgtatgccaatttgtcctttgtgattagtaattctttgaactgtttgctttattggagagtcccagtttctgtttttggctgtttattagttagatataat...
species | Glycine max |
transcript | GLYMA13G10490.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GGTACTGCAAAGGCCGTTTTGAATCAGCATTTGTTAAATTTCCCTTACAG GAAGCAATGATGAAAGATACATTAGAACGAACAACAGAACCTAACCTGAACEST: gi|27446281|gb|CA953404.1|CA953404
genomic: GGTACTGCAAAGGCCGTTTTGAATCAGCATTTGTTAAATTTCCCTTACAGgtatgccaat ... atttatgcagGAAGCAATGATGAAAGATACATTAGAACGAACAACAGAACCTAACCTGAAC
EST: GGTACTGCAAAGGCCGTTTTGAATCAGCATTTGTTAAATTTCCCTTACAG GAAGCAATGATGAAAGATACATTAGAACGAACAACAGAACCTAACCTGAACEST: gi|208271395|gb|GE072601.1|GE072601
genomic: GGTACTGCAAAGGCCGTTTTGAATCAGCATTTGTTAAATTTCCCTTACAGgtatgccaat ... atttatgcagGAAGCAATGATGAAAGATACATTAGAACGAACAACAGAACCTAACCTGAAC
EST: GGTACTGCAAAGGCCGTTTTGAATCAGCATTTGTTAAATTTCCCTTACAG GAAGCAATGATGAAAGATACATTAGAACGAACAACAGAACCTAACCTGAACEST: gi|208222673|gb|GE019606.1|GE019606
genomic: GGTACTGCAAAGGCCGTTTTGAATCAGCATTTGTTAAATTTCCCTTACAGgtatgccaat ... atttatgcagGAAGCAATGATGAAAGATACATTAGAACGAACAACAGAACCTAACCTGAAC
EST: GGTACTGCAAAGGCCGTTTTGAATCAGCATTTGTTAAATTTCCCTTACAG GAAGCAATGATGAAAGATACATTAGAACGAACAACAGAACCTAACCTGAAC
genomic: GGTACTGCAAAGGCCGTTTTGAATCAGCATTTGTTAAATTTCCCTTACAGgtatgccaat ... atttatgcagGAAGCAATGATGAAAGATACATTAGAACGAACAACAGAACCTAACCTGAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCAACTCCTTTTCTCGTTGTGCTCCCAATACTAACCATATGGTTCCATAGGTACTGCAAAGGCCGTTTTGAATCAGCATTTGTTAAATTTCCCTTACAGgtatgccaatttgtcctttgtgattagtaattctttgaactgtttgctttattggagagtcccagtttctgtttttggctgtttattagttagatataat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG