1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TTTGGGTGAGAACTATGATCATGAAGAGATGGAAAGGATGGTCTTGGCAGCTACACTTTGTATCAGACGTGCTCCAAGGGCTAGGCCTCTAATGAGCCTTgtaagttatctaaaaattataattggagtcctccctatgccgtagaaatgacaagaaaaaatgttttgttacaattggggagctttttcttgtggaaaag...
species | Glycine max |
transcript | GLYMA13G09620.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CTACACTTTGTATCAGACGTGCTCCAAGGGCTAGGCCTCTAATGAGCCTT ATCTCTAAGCTCCTTGGAGGTGATCCTGATGTGATCAAGTGGGCAAGACTAEST: gi|193414737|gb|FK381391.1|FK381391
genomic: CTACACTTTGTATCAGACGTGCTCCAAGGGCTAGGCCTCTAATGAGCCTTgtaagttatc ... tggactacagATCTCTAAGCTCCTTGGAGGTGATCCTGATGTGATCAAGTGGGCAAGACTA
EST: CTACACTTTGTATCAGACGTGCTCCAAGGGCTAGGCCTCTAATGAGCCTT ATCTCTAAGCTCCTTGGAGGTGATCCTGATGTGATCAAGTGGGCAAGACTAEST: gi|193397057|gb|FK362013.1|FK362013
genomic: CTACACTTTGTATCAGACGTGCTCCAAGGGCTAGGCCTCTAATGAGCCTTgtaagttatc ... tggactacagATCTCTAAGCTCCTTGGAGGTGATCCTGATGTGATCAAGTGGGCAAGACTA
EST: CTACACTTTGTATCAGACGTGCTCCAAGGGCTAGGCCTCTAATGAGCCTT ATCTCTAAGCTCCTTGGAGGTGATCCTGATGTGATCAAGTGGGCAAGACTAEST: gi|209722126|gb|BW672375.1|BW672375
genomic: CTACACTTTGTATCAGACGTGCTCCAAGGGCTAGGCCTCTAATGAGCCTTgtaagttatc ... tggactacagATCTCTAAGCTCCTTGGAGGTGATCCTGATGTGATCAAGTGGGCAAGACTA
EST: CAGACGTGCTCCAAGGGCTAGGCCTCTAATGAGCCTT ATCTCTAAGCTCCTTGGAGGTGATCCTGATGTGATCAAGTGGGCAAGACTAEST: gi|57575171|gb|CX548146.1|CX548146
genomic: CAGACGTGCTCCAAGGGCTAGGCCTCTAATGAGCCTTgtaagttatc ... tggactacagATCTCTAAGCTCCTTGGAGGTGATCCTGATGTGATCAAGTGGGCAAGACTA
EST: CTACACTTTGTATCAGACGTGCTCCAAGGGCTAGGCCTCTAATGAGCCTT ATCTCTAAGCTCCTTGGAGGTGATCCTGATGTGATCAAGTGGGCAAGACTAEST: gi|58021051|gb|CX707793.1|CX707793
genomic: CTACACTTTGTATCAGACGTGCTCCAAGGGCTAGGCCTCTAATGAGCCTTgtaagttatc ... tggactacagATCTCTAAGCTCCTTGGAGGTGATCCTGATGTGATCAAGTGGGCAAGACTA
EST: CTACACTTTGTATCAGACGTGCTCCAAGGGCTAGGCCTCTAATGAGCCTT ATCTCTAAGCTCCTTGGAGGTGATCCTGATGTGATCAAGTGGGCAAGACTAEST: gi|58015154|gb|CX701896.1|CX701896
genomic: CTACACTTTGTATCAGACGTGCTCCAAGGGCTAGGCCTCTAATGAGCCTTgtaagttatc ... tggactacagATCTCTAAGCTCCTTGGAGGTGATCCTGATGTGATCAAGTGGGCAAGACTA
EST: CTACACTTTGTATCAGACGTGCTCCAAGGGCTAGGCCTCTAATGAGCCTT ATCTCTAAGCTCCTTGGAGGTGATCCTGATGTGATCAAGTGGGCAAGACTAEST: gi|151397175|gb|EV267048.1|EV267048
genomic: CTACACTTTGTATCAGACGTGCTCCAAGGGCTAGGCCTCTAATGAGCCTTgtaagttatc ... tggactacagATCTCTAAGCTCCTTGGAGGTGATCCTGATGTGATCAAGTGGGCAAGACTA
EST: CTACACTTTGTATCAGACGTGCTCCAAGGGCTAGGCCTCTAATGAGCCTT ATCTCTAAGCTCCTTGGAGGTGATCCTGATGTGATCAAGTGGGCAAGACTAEST: gi|22927621|gb|BU544760.1|BU544760
genomic: CTACACTTTGTATCAGACGTGCTCCAAGGGCTAGGCCTCTAATGAGCCTTgtaagttatc ... tggactacagATCTCTAAGCTCCTTGGAGGTGATCCTGATGTGATCAAGTGGGCAAGACTA
EST: CTACACTTTGTATCAGACGTGCTCCAAGGGCTAGGCCTNNAATGAGNNNT ATCTNNAAGCTCCTTGGAGGTGATCCTGATGTGATCAAGTGGGCAAGACTA
genomic: CTACACTTTGTATCAGACGTGCTCCAAGGGCTAGGCCTCTAATGAGCCTTgtaagttatc ... tggactacagATCTCTAAGCTCCTTGGAGGTGATCCTGATGTGATCAAGTGGGCAAGACTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTGGGTGAGAACTATGATCATGAAGAGATGGAAAGGATGGTCTTGGCAGCTACACTTTGTATCAGACGTGCTCCAAGGGCTAGGCCTCTAATGAGCCTTgtaagttatctaaaaattataattggagtcctccctatgccgtagaaatgacaagaaaaaatgttttgttacaattggggagctttttcttgtggaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctccct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaaaaaa