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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCACTTTTTCAGCGTGTGCTTGTTAATGAGTGTCGGAGTAGAAAAATTCCAGTAATCTTTGATGAGGTTTTTACTGGCTTTTGGCGTTTGGGAGTAGAGgtgatttctctcagtgactgctattctcttatttacaaaactgtttttcatattgttcattagttcatttgtttgatcagcagtttatatttcttctcacag

Basic information

species Glycine max
transcript GLYMA13G01170.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G01170.1 (Glycine max), 5'ss of exon 11
lower sequence: AT5G57590.1 (Arabidopsis thaliana), 5'ss of exon 10
TCCACTTTTTCAGCGTGTGCTTGTTAATGAGTGTCGGAGTAGAAAAATTCCAGTAATCTTTGATGAGGTTTTTACTGGCTTTTGGCGTTTGGGAGTAGAGgtg---atttctctcagtgactgctattctcttatttacaaaactgtttttcatattgttcattagtt-catttgtttgatcagcagtttatatttcttctcacag
||| ||||| || || ||  | || |||||||| |||| ||||||||||||||| || || ||||| || || || || || |||||| | |||||||||||    |||  | | |     || |||  |  | ||   | |     ||| | |  || | |  | || |  |  ||| | ||                       
TCCGCTTTTCCAACGAGTTTTGGTGAATGAGTGCCGGAATAGAAAAATTCCAGTCATTTTCGATGAAGTGTTCACAGGATTCTGGCGTCTTGGAGTAGAGgtagtaattaatgtaatcttttgatatatttctgttactacattctatttacgttctgctaacaaattaccgtaattttaccaag---------------------

upper sequence: GLYMA13G01170.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv11s0052g01390.t01 (Vitis vinifera), 5'ss of exon 10
TCCACTTTTTCAGCGTGTGCTTGTTAATGAGTGTCGGAGTAGAAAAATTCCAGTAATCTTTGATGAGGTTTTTACTGGCTTTTGGCGTTTGGGAGTAGAGgtgatttctctcagtgactgctattctcttatttacaaaactgtttttcatattgttcattagttcatttgtttgatcagcagtttatatttcttctcacag
||||||||||||  | || ||||| ||||||||||| ||  |||||||||| || |||||||||||||||||||| || || |||||| |||| | ||||||        |   || ||   ||  || || || ||       |||   | |  ||| || | ||| || ||||||  | | |||| |||| |  | | ||
TCCACTTTTTCAAAGAGTACTTGTGAATGAGTGTCGAAGCCGAAAAATTCCTGTTATCTTTGATGAGGTTTTTACAGGGTTCTGGCGTCTGGGTGCAGAGgt--------tggttgcctataatattcataattgca-------tttctttctcattcttttgctcaattatttgattgg-aattta-atttttctttatag