1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
TCTGCCTTGCTTGCCTTAGCTGCTCATGCATCTGATCCATCTGAAGCTGATCGACTAAGACATCTTGCCTCACCTGCTGGAAAGgtttaatattttattattttatatcaagggaattttaagtaactttttctacttatttttctcattcgtatgctactcttgtgtgcctttgtag
species | Glycine max |
transcript | GLYMA13G00990.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: ATCCATCTGAAGCTGATCGACTAAGACATCTTGCCTCACCTGCTGGAAAG GATGAATATTCAGAATGGGTGATTACCTCTCAGAGAAGTCTCCTTGAGGTCEST: gi|105637293|gb|DY577108.1|DY577108
genomic: ATCCATCTGAAGCTGATCGACTAAGACATCTTGCCTCACCTGCTGGAAAGgtttaatatt ... gcctttgtagGATGAATATTCAGAATGGGTGATTACCTCTCAGAGAAGTCTCCTTGAGGTC
EST: ATCCATCTGAAGCTGATCGACTAAGACATCTTGCCTCACCTGCTGGAAAG GATGAATATTCAGAATGGGTGATTACCTCTCAGAGAAGTCTCCTTGAGGTCEST: gi|7691075|gb|AW759209.1|AW759209
genomic: ATCCATCTGAAGCTGATCGACTAAGACATCTTGCCTCACCTGCTGGAAAGgtttaatatt ... gcctttgtagGATGAATATTCAGAATGGGTGATTACCTCTCAGAGAAGTCTCCTTGAGGTC
EST: ATCCATCTGAAGCTGATCGACTAAGACATCTTGCCTCACCTGCTGGAAAG GATGAATATTCAGAATGGGTGATTACCTCTCAGAGAAGTCTCCTTGAGGTC
genomic: ATCCATCTGAAGCTGATCGACTAAGACATCTTGCCTCACCTGCTGGAAAGgtttaatatt ... gcctttgtagGATGAATATTCAGAATGGGTGATTACCTCTCAGAGAAGTCTCCTTGAGGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTGCCTTGCTTGCCTTAGCTGCTCATGCATCTGATCCATCTGAAGCTGATCGACTAAGACATCTTGCCTCACCTGCTGGAAAGgtttaatattttattattttatatcaagggaattttaagtaactttttctacttatttttctcattcgtatgctactcttgtgtgcctttgtag
- - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA