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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCAGTTAATGATTTGGATATTGCATTGCAAAATTTTGTGAACAAAGATGATAAAATGGCATTTTACTCTTGTGTAAAATACAATATCGAGGAAACACGAgtgagtactctatgttgcatttatctgccatatgcctttgtctatatgatgctgctatgctggaacatctggtccatattttgttccacagcctattaag...

Basic information

species Glycine max
transcript GLYMA12G34750.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G34750.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os04g54340.1 (Oryza sativa), 5'ss of exon 17
GCCAGTTAATGATTTGGATATTGCATTGCAAAATTTTGTGAACAAAGATGATAAAATGGCATTTTACTCTTGTGTAAAATACAATATCGAGGAAACACGAgtgagtact-ctatgttgcat-ttatctgccatatgcctttgtctatatgatgctgctatgctggaacatctg-gtccatattttgttccacagcctattaag---------------------------------------------------------------------------------------
 |||||| |||| ||||| |||||||||||  ||||||||| ||| ||||| || ||||| |||||  | ||| |  |    ||| | || |||||  ||||  |   | |||  ||   | || |  |   ||   |||| | | ||| |    ||  |       ||| |   |  |||           ||  ||   ||                                                                                       
TCCAGTTGATGACTTGGACATTGCATTGCATGATTTTGTGAGCAAGGATGACAAGATGGCGTTTTATGCCTGTTTGCAGCGGAATCTTGAAGAAACCAGAgtatgctttgctacattttctattgttggttttagttctttttttttatcaaagggccgtagctctccatttccattaatagaaatgagactagaatacagaggtagccttttttagttcttatttgattgcttgctgcctgataaaattgcatgcatctaaaattgaaatcctttgttgaaacctgcag

upper sequence: GLYMA12G34750.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G106056_T03 (Zea mays), 5'ss of exon 17
GCCAGTTAATGATTTGGATATTGCATTGCAAAATTTTGTGAACAAAGATGATAAAATGGCATTTTACTCTTGTGTAAAATACAATATCGAGGAAACACGAgtgag----tactctatgttgcatttatctgccatatgcctttgtctatatgatgct---gctatgctggaacatctg--gtccatattttgttccacagcctattaag
 || ||| |||||||||| ||||| |||||  ||||||||||||| ||||| || ||||||||||| || ||| |  |    ||  | || |||||  | ||  |      | | || ||   || |  |    | |||  |||   |||||||||    |         |||||||   | | | |  ||| |  | |   | |  ||
TCCGGTTGATGATTTGGACATTGCGTTGCATGATTTTGTGAACAAGGATGACAAGATGGCATTTTATTCATGTTTGCAGAGAAACCTTGAAGAAACCAGGgtatgattccccacaattttctgttaacttcagctctgcagttgggcatatgatgccagagaagcatcataacatctaaagccgaaagcttgattaatatgttttgcag

upper sequence: GLYMA12G34750.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv19s0014g03680.t01 (Vitis vinifera), 5'ss of exon 16
GCCAGTTAATGATTTGGATATTGCATTGCAAAATTTTGTGAACAAAGATGATAAAATGGCATTTTACTCTTGTGTAAAATACAATATCGAGGAAACACGAgtgagtactctatgttgcatttatctgccatatgcctttgtctatatgatgctgctatgctggaacatctggtccatattttgt-tccacagcctattaag------
 ||||| |||||||||||| |||||||||| |||||||| ||||||||||| |||||||| || || ||||||||  |||| ||| | || || ||||| || ||||||| || ||   | |      || ||  || || | ||||  ||| | ||   | |      |  |   |||      || | |   |||| |       
TCCAGTCAATGATTTGGATGTTGCATTGCACAATTTTGTCAACAAAGATGACAAAATGGCTTTCTATTCTTGTGTTCAATATAATCTGGAAGAGACACGTgtaagtactccatattatgtct-----tcaaatttctgtgacaatat--tgcagatagtttaggttggtttttagttataccacatctatatggtattgaatttgtt

upper sequence: GLYMA12G34750.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv00s0160g00370.t01 (Vitis vinifera), 5'ss of exon 4
GCCAGTTAATGATTTGGATATTGCATTGCAAAATTTTGTGAACAAAGATGATAAAATGGCATTTTACTCTTGTGTAAAATACAATATCGAGGAAACACGAgtgagtactctatgttgcatttatctgccatatgcctttgtctatatgatgctgctatgctggaacatctggtccatattttgttccacagcctattaag------
 ||||| |||||| ||||| |||||||||| |||||||| ||||||||||| |||||| | || || ||||||||  |||| ||| | || || ||||  || ||||||| || ||   | |      || ||  || || | |||||         ||  |     | |     |||     | | | |   |||| |       
TCCAGTCAATGATGTGGATCTTGCATTGCACAATTTTGTCAACAAAGATGACAAAATGTCTTTCTATTCTTGTGTTCAATATAATCTGGAAGAGACACATgtaagtactccatattatgtct-----tcaaatttctgtgacaatatggcagatagttgaggttggtttttagttataccacat-ctatatggtattgaatttgtt