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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGATATTCTTTCCAACGGTGGAGTTGTTCAAGAAATGGCACACATTGCCAATGGCCGAGACACTGGAAATTGTGTCTCTCTACTTCGGGTGAATgtaagttgaccataccctatagccacatttactattcatcaatttcatgaaatctttctttttcattaatttctagtcaaactaaagatatgtttgttta...

Basic information

species Glycine max
transcript GLYMA12G32050.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G32050.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv12s0059g02310.t01 (Vitis vinifera), 5'ss of exon 10
TGGGATATTCTTTCCAACGGTGGAGTTGTTCAAGAAATGGCACACATTGCCAATGGCCGAGACACTGGAAATTGTGTCTCTCTACTTCGGGTGAATgtaagttgaccataccctatagccacatttactattcatcaatttcatgaaatctttctttttcattaatttctagtcaaactaaagatatgtttgttta
||||||||||| || || ||||| |||||||||||||||||||| || || ||||| | |||||| || || ||||| |||||  | ||||| |||||| ||| |   | |  ||       | ||  | ||| | | |||  ||      | |||   |    ||   ||  ||   | || || | |       
TGGGATATTCTCTCAAATGGTGGGGTTGTTCAAGAAATGGCACATATAGCGAATGGTCAAGACACAGGCAACTGTGTATCTCTGTTACGGGTAAATgtaggttaatatttctataattttctagttcttgttc-ttattttagtgcttgtgtccttcaaccaacatgcttaaccattgtgaacatttctag-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208193920|gb|GD989793.1|GD989793
EST:     TTGCCAATGGCCGAGACACTGGAAATTGTGTCTCTCTACTTCGGGTGAAT                         AGTGCGAATTCAAGCCAAAGCAACATGTTGATATTACAAGAGAGTTGCGCG
genomic: TTGCCAATGGCCGAGACACTGGAAATTGTGTCTCTCTACTTCGGGTGAATgtaagttgac ... gtgcatgcagAGTGCGAATTCAAGCCAAAGCAACATGTTGATATTACAAGAGAGTTGCGCG
EST: gi|6227856|gb|AW156455.1|AW156455
EST:     TTGCCAATGGCCGAGACACTGGAAATTGTGTCTCTCTACTTCGGGTGAAT                         AGTGCGAATTCAAGCCAAAGCAACATGTTGATATTACAAGAGAGTTGCGCG
genomic: TTGCCAATGGCCGAGACACTGGAAATTGTGTCTCTCTACTTCGGGTGAATgtaagttgac ... gtgcatgcagAGTGCGAATTCAAGCCAAAGCAACATGTTGATATTACAAGAGAGTTGCGCG
EST: gi|208307838|gb|GE104982.1|GE104982
EST:     TTGCCAATGGCCGAGACACTGGAAATTGTGTCTCTCTACTTCGGGTGAAT                         AGTGCGAATTCAAGCCAAAGCAACATGTTGATATTACAAGAGAGTTGCGCG
genomic: TTGCCAATGGCCGAGACACTGGAAATTGTGTCTCTCTACTTCGGGTGAATgtaagttgac ... gtgcatgcagAGTGCGAATTCAAGCCAAAGCAACATGTTGATATTACAAGAGAGTTGCGCG
EST: gi|298166235|gb|HO009206.1|HO009206
EST:     TTGCCAATGGCCGAGACACTGGAAATTGTGTCTCTCTACTTCGGGTGAAT                         AGTGCGAATTCAAGCCAAAGCAACATGTTGATATTACAAGAGAGTTGCGCG
genomic: TTGCCAATGGCCGAGACACTGGAAATTGTGTCTCTCTACTTCGGGTGAATgtaagttgac ... gtgcatgcagAGTGCGAATTCAAGCCAAAGCAACATGTTGATATTACAAGAGAGTTGCGCG
EST: gi|193386002|gb|FK352372.1|FK352372
EST:     TTGCCAATGGCCGAGACACTGGAAATTGTGTCTCTCTACTTCGGGTGAAT                         AGTGCGAATTCAAGCCAAAGCAACATGTTGATATTAACAAGAGAGTTG
genomic: TTGCCAATGGCCGAGACACTGGAAATTGTGTCTCTCTACTTCGGGTGAATgtaagttgac ... gtgcatgcagAGTGCGAATTCAAGCCAAAGCAACATGTTGATATTA-CAAGAGAGTTG
EST: gi|120532754|gb|EH260887.1|EH260887
EST:     TTGCCAATGGCCGAGACACTGGAAATTGTGTCTCTCTACTTCGGGTGAAT                         AGTGCGAATTCAAGCCAAAGCAACATGTTGATATTACAAGAGAGTTGCGCG
genomic: TTGCCAATGGCCGAGACACTGGAAATTGTGTCTCTCTACTTCGGGTGAATgtaagttgac ... gtgcatgcagAGTGCGAATTCAAGCCAAAGCAACATGTTGATATTACAAGAGAGTTGCGCG
EST: gi|193620940|gb|FK569994.1|FK569994
EST:     CACTGGAAATTGTGTCTCTCTACTTCGGGTGAAT                         AGTGCGAATTCAAGCCAAAGCAACATGTTGATATTACAAGAGAGTTGCGCG
genomic: CACTGGAAATTGTGTCTCTCTACTTCGGGTGAATgtaagttgac ... gtgcatgcagAGTGCGAATTCAAGCCAAAGCAACATGTTGATATTACAAGAGAGTTGCGCG
EST: gi|120532424|gb|EH260557.1|EH260557
EST:     TTGCCAATGGCCGAGACACTGGAAATTGTGTCTCTCTACTTCGGGTGAAT                         AGTGCGAATTCAAGCCAAAGCAACATGTTGATATTACANAGAGAGTTGCGC
genomic: TTGCCAATGGCCGAGACACTGGAAATTGTGTCTCTCTACTTCGGGTGAATgtaagttgac ... gtgcatgcagAGTGCGAATTCAAGCCAAAGCAACATGTTGATATTACA-AGAGAGTTGCGC
EST: gi|207755393|gb|GD729428.1|GD729428
EST:     TTGCCAATGGCCGAGACACTGGAAATTGTGTCTCTCTACTTCGGGTGAAT                         AGTGCGAATTCAAGCCAAAGCAACATGTTGATATTACAAGAGAGTTGCGCG
genomic: TTGCCAATGGCCGAGACACTGGAAATTGTGTCTCTCTACTTCGGGTGAATgtaagttgac ... gtgcatgcagAGTGCGAATTCAAGCCAAAGCAACATGTTGATATTACAAGAGAGTTGCGCG