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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGATGGATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCTgtacgtgaatatttaacaacagtacatttttttaaatcaattttgctattccaaatatgcgtatgtatgctttatcattgggtgattgaactatatataattggttaattgtgtctgcag

Basic information

species Glycine max
transcript GLYMA12G29550.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193340885|gb|FK307162.1|FK307162
EST:     GATTTCCCACTCTCCTCCTCTTCCCGGCAGGAAACAAGAGTTTTGACCCT                         ATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
genomic: GATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCTgtacgtgaat ... gtgtctgcagATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
EST: gi|120534021|gb|EH262154.1|EH262154
EST:     GATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCT                         ATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
genomic: GATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCTgtacgtgaat ... gtgtctgcagATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
EST: gi|58017030|gb|CX703772.1|CX703772
EST:     GATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCT                         ATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
genomic: GATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCTgtacgtgaat ... gtgtctgcagATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
EST: gi|10844549|gb|BF067876.1|BF067876
EST:     GATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCT                         ATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
genomic: GATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCTgtacgtgaat ... gtgtctgcagATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
EST: gi|58024880|gb|CX711621.1|CX711621
EST:     GATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCT                         ATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
genomic: GATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCTgtacgtgaat ... gtgtctgcagATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
EST: gi|207773559|gb|GD744571.1|GD744571
EST:     GATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAGGAGTTTTGACCCT                         ATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
genomic: GATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCTgtacgtgaat ... gtgtctgcagATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
EST: gi|254323994|gb|GR836226.1|GR836226
EST:     GATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCT                         ATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
genomic: GATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCTgtacgtgaat ... gtgtctgcagATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
EST: gi|19268670|gb|BM884926.1|BM884926
EST:     CCGGCAGGAAACAAGAGTTTTGACCCT                         ATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
genomic: CCGGCAGGAAACAAGAGTTTTGACCCTgtacgtgaat ... gtgtctgcagATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
EST: gi|208211647|gb|GE009922.1|GE009922
EST:     AGGAAACAAGAGTTTTGTACCCT                         ATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAA
genomic: AGGAAACAAGAGTTTTG-ACCCTgtacgtgaat ... gtgtctgcagATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAA
EST: gi|213613712|gb|DB980522.1|DB980522
EST:     CGGCAGGAAACAAGAGTTTTGACCCT                         ATTACTGTTGATACAGATCGTACAGTGGTAGCCTAAAACAAGTTCCTCAAG
genomic: CGGCAGGAAACAAGAGTTTTGACCCTgtacgtgaat ... gtgtctgcagATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
EST: gi|37995855|gb|CF807444.1|CF807444
EST:     GATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCT                         ATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
genomic: GATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCTgtacgtgaat ... gtgtctgcagATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
EST: gi|57575124|gb|CX548099.1|CX548099
EST:     GATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCT                         ATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
genomic: GATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCTgtacgtgaat ... gtgtctgcagATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCTGATGGATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCTgtacgtgaatatttaacaacagtacatttttttaaatcaattttgctattccaaatatgcgtatgtatgctttatcattgggtgattgaactatatataattggttaattgtgtctgcag

- - - - - - - - - CTCCTC