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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTACTACTATGTGAAGACGAAGATGTCAGGCTTCTTCCAAACCAGCTTCTATTTTGGATACACTTTGATGTTTTGTCTTGGACTGGGAATTCTGTGTGgtaagtcttcagtttaattgtaatctctgcagaaatgggataccttagttaagtgctgaatacctttttttaatatttatattaatgctagagtgttcttaatcttatcacttgaattggattaaatttttctccaaatgtgcag

Basic information

species Glycine max
transcript GLYMA12G29120.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G29120.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os11g07910.1 (Oryza sativa), 5'ss of exon 11
TACTACTACTATGTGAAGACGAAGATGTCAGGCTTCTTCCAAACCAGCTTCTATTTTGGATACACTTTGATGTTTTGTCTTGGACTGGGAATTCTGTGTGgtaagtcttcagtttaattgtaatctctgcagaaatgggataccttagttaagtgctgaatacctttttttaatatttatattaatgctagagtgttcttaatcttatcacttgaattggattaaatttttctccaaatgtgcag
||||| ||  | |||||||| |||||||| ||||||||||| || |||||||| ||||| ||||| |||||||| || || ||||| |||||||| || ||| ||  || |    | ||||| ||  ||           ||  | |   || |||    |    | |||| | |   |  |   || |  ||                                                    
TACTATTATCACGTGAAGACAAAGATGTCTGGCTTCTTCCAGACAAGCTTCTACTTTGGCTACACCTTGATGTTCTGCCTCGGACTAGGAATTCTTTGCGgtgagcatttaa---acttgtattcattg-----------tatttca---aattgccacttggtctgttttgacacc-acgtctttggtttag----------------------------------------------------

upper sequence: GLYMA12G29120.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os12g07670.1 (Oryza sativa), 5'ss of exon 11
TACTACTACTATGTGAAGACGAAGATGTCAGGCTTCTTCCAAACCAGCTTCTATTTTGGATACACTTTGATGTTTTGTCTTGGACTGGGAATTCTGTGTGgtaagtcttcagtttaattgtaatctctgcagaaatgggataccttagttaagtgctgaatacctttttttaatatttatattaatgctagagtgttcttaatcttatcacttgaattggattaaatttttctccaaatgtgcag
||||||||  |||| ||||| ||||||||||| || ||||| || || ||||| || || ||||| |||||||| || ||||| || || || || |||||||||   | | |||  |  || |  ||    |   | || || |||      || ||  |   || |||| | || | | ||   | |  ||                                                    
TACTACTATCATGTAAAGACAAAGATGTCAGGTTTTTTCCAGACGAGTTTCTACTTCGGTTACACATTGATGTTCTGCCTTGGTCTAGGCATACTTTGTGgtaagatcttaatttc-tactagtaccttttaatccgtgacactttatcattatgatgttt---ttgttttgacatctgttttggcgattcag----------------------------------------------------

upper sequence: GLYMA12G29120.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G087212_T01 (Zea mays), 5'ss of exon 11
TACTACTACTATGTGAAGACGAAGATGTCAGGCTTCTTCCAAACCAGCTTCTATTTTGGATACACTTTGATGTTTTGTCTTGGACTGGGAATTCTGTGTGgtaagtcttcagtttaattgtaatctctgcagaaatgggataccttagttaagtgctgaatacctttttttaatatttatattaatgctagagtgttcttaatcttatcacttgaattggattaaatttttctccaaatgtgcag
||||| ||  |||||||||| ||||||||||| || ||||| || |||||||| ||||| ||||| |||||||| ||||||||| ||||||| || || ||| ||||||||   |  || | ||||      |       |||  | ||   ||  |||  |||||| | |  | | ||| |                                                               
TACTATTATCATGTGAAGACAAAGATGTCAGGATTTTTCCAGACAAGCTTCTACTTTGGTTACACCTTGATGTTCTGTCTTGGATTGGGAATACTTTGCGgtgagtcttcaaacttgttttcatctaatttcagtct---tacagtggtcgtgttttga-cacctttctatg-tgtatatgtag-------------------------------------------------------------

upper sequence: GLYMA12G29120.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G420310_T01 (Zea mays), 5'ss of exon 11
TACTACTACTATGTGAAGACGAAGATGTCAGGCTTCTTCCAAACCAGCTTCTATTTTGGATACACTTTGATGTTTTGTCTTGGACTGGGAATTCTGTGTGgtaagtcttcagtttaattgtaatctctgcagaaatgggataccttagt-taagtgctgaatacctttttttaatatttatattaatgctagagtgttcttaatcttatcacttgaattggattaaatttttctccaaatgtgcag
||||||||| |||||||||| |||||||||||||||||||| || || |||||||| || |||||  ||||||| || ||||| || || || || |||||||||    |  || ||    |     |||         | |  | | | |   || |   |  | | |  |  | | | |  | || | ||                                                      
TACTACTACCATGTGAAGACAAAGATGTCAGGCTTCTTCCAGACAAGTTTCTATTTCGGCTACACGCTGATGTTCTGCCTTGGCCTAGGCATACTTTGTGgtaagatcgcctttcaaccaaagatcatgccttggcaatagatgtgactgtttttggtctctgacctgtcgtcttttgtttggtgattccag------------------------------------------------------

upper sequence: GLYMA12G29120.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G026231_T01 (Zea mays), 5'ss of exon 11
TACTACTACTATGTGAAGACGAAGATGTCAGGCTTCTTCCAAACCAGCTTCTATTTTGGATACACTTTGATGTTTTGTCTTGGACTGGGAATTCTGTGTGgtaagtcttcagtttaattgtaatctctgcagaa-atgggataccttagttaagtgctgaatacctttttttaatatttatattaatgctagagtgttcttaatcttatcacttgaattggattaaatttttctccaaatgtgcag
||||||||| |||||||||| |||||||||||||||||||| || || ||||| ||||| |||||  ||||||| || ||||| || || || || |||||||||     | |   |||||   |||||||  | ||| ||    |  |||     |     |  ||| ||    ||| |                                                                  
TACTACTACCATGTGAAGACAAAGATGTCAGGCTTCTTCCAGACAAGTTTCTACTTTGGTTACACACTGATGTTCTGCCTTGGTCTAGGCATACTTTGTGgtaagct---aat---attgtg-cctctgcaatatatgtgacttttcggtttttgacctgtgatttttgttggtgattcag-----------------------------------------------------------------

upper sequence: GLYMA12G29120.1 (Glycine max), 5'ss of exon 11
lower sequence: AT1G10950.1 (Arabidopsis thaliana), 5'ss of exon 11
TACTACTACTATGTGAAGACGAAGATGTCAGGCTTCTTCCAAACCAGCTTCTATTTTGGATACACTTTGATGTTTTGTCTTGGACTGGGAATTCTGTGTGgtaagtcttcagtttaattgtaatctctgcagaaatgggataccttagttaagtgctgaatacctttttttaatatttatattaatgctagagtgttcttaatcttatcacttgaattggattaaatttttctccaaatgtgcag
|| |||||||| || ||||| |||||||| || |||||||| || |||||||| |||||||||||  ||||||| |||||||| || ||||| || || ||| ||   ||| | |  |     |||    |  |  | |     ||| | |  ||   || |||||  ||   |    || ||   |                                                          
TATTACTACTACGTAAAGACCAAGATGTCCGGATTCTTCCAGACAAGCTTCTACTTTGGATACACCATGATGTTCTGTCTTGGCCTTGGAATCCTTTGCGgtgagc--tcactctcttcactctcttcaaactagcgagtggtgttattgatttgactaa-accttcgttatgtgaaaattttgcag----------------------------------------------------------

upper sequence: GLYMA12G29120.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv12s0035g00280.t01 (Vitis vinifera), 5'ss of exon 11
TACTACTACTATGTGAAGACGAAGATGTCAGGCTTCTTCCAAACCAGCTTCTATTTTGGATACACTTTGATGTTTTGTCTTGGACTGGGAATTCTGTGTGgtaagtcttcagtttaattgtaatctctgcagaaatgggataccttagttaagtgctgaatacctt-tttttaatatttatattaatgctagagtgttcttaatcttatcacttgaattggattaaatttttctccaaatgtgcag
|| ||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||  |||||||||| |||||  | ||||| || |||||| |||      ||  |  ||  |||           |  | | ||  |||     ||  |||||| ||||| | || |  ||| ||  |    | |    ||| | ||    | ||   |                         
TATTACTACTATGTGAAGACTAAGATGTCAGGCTTCTTCCAAACCAGCTTCTACTTCGGATACACCCTGATGTTTTGCCTTGGTTTAGGAATCCTCTGTGgtgagt------ttctacggtgttct-----------gattcctttttttataatttgtgtaccttatttttcacatattcattgatttt----tatatgaaatttcattttctaaaaaag-------------------------

upper sequence: GLYMA12G29120.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv18s0041g00680.t01 (Vitis vinifera), 5'ss of exon 11
TACTACTACTATGTGAAGACGAAGATGTCAGGCTTCTTCCAAACCAGCTTCTATTTTGGATACACTTTGATGTTTTGTCTTGGACTGGGAATTCTGTGTGgtaagtcttcagtttaattgtaatctctgcagaaatgggataccttagttaagtgctgaatacctttttttaatatttatattaatgctagagtgttcttaatcttatcacttgaat----tggattaaatttttctccaaatgtgcag-------------------------------
|| ||||| ||| ||||||| ||||||||||||||||||||||||||||| |||||||| |||||| | ||||| || |||||  |||| || |||||||||||||   || | | |    ||| | |    || |    |  ||   |  |   || |   |  | | |   ||| |||   |    || |    |||  | |   ||  ||  |     |    |  | |||||| |    |    |                               
TATTACTATTATATGAAGACCAAGATGTCAGGCTTCTTCCAAACCAGCTTTTATTTTGGTTACACTCTCATGTTATGCCTTGGTTTGGGGATACTGTGTGgtaagtagccattcttagctcaatttttttttaacttctctctctctctctatctct-atctctctatctccctatctat-ccatctatatatctatctccagccgttcttttagacatccttatctgcaattttcttcgggagcattgatggggttttgttattctcttgatactctag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26059492|gb|CA802406.1|CA802406
EST:     CTATTTTGGATACACTTTGATGTTTTGTCTTGGACTGGGAATTCTGTGTG                         GAGCTGTGGGTTATCTTGGTTCGAATTTGTTTGTGAGGAGGATCTACAGAA
genomic: CTATTTTGGATACACTTTGATGTTTTGTCTTGGACTGGGAATTCTGTGTGgtaagtcttc ... aaatgtgcagGAGCTGTGGGTTATCTTGGTTCGAATTTGTTTGTGAGGAGGATCTACAGAA
EST: gi|10235837|gb|BE804725.1|BE804725
EST:     CTATTTTGGATACACTTTGATGTTTTGTCTTGGGCTGGGAATTCTGTGTG                         GAGCTGTGGGTTATCTTGGTTCGAATTTGTTTGTGAGGAGGATCTACAGAA
genomic: CTATTTTGGATACACTTTGATGTTTTGTCTTGGACTGGGAATTCTGTGTGgtaagtcttc ... aaatgtgcagGAGCTGTGGGTTATCTTGGTTCGAATTTGTTTGTGAGGAGGATCTACAGAA
EST: gi|31464110|gb|CD406138.1|CD406138
EST:     CTATTTTGGATACACTTTGATGTTTTGTCTTGGACTGGGAATTCTGTGTG                         GAGCTGTGGGTTATCTTGGTTCGAATTTGTTTGTGAGGAGGATCTACAGAA
genomic: CTATTTTGGATACACTTTGATGTTTTGTCTTGGACTGGGAATTCTGTGTGgtaagtcttc ... aaatgtgcagGAGCTGTGGGTTATCTTGGTTCGAATTTGTTTGTGAGGAGGATCTACAGAA
EST: gi|37995726|gb|CF807315.1|CF807315
EST:     CTATTTTGGATACACTTTGATGTTTTGTCTTGGACTGGGAATTCTGTGTG                         GAGCTGTGGGTTATCTTGGTTCGAATTTGTTTGTGAGGAGGATCTACAGAA
genomic: CTATTTTGGATACACTTTGATGTTTTGTCTTGGACTGGGAATTCTGTGTGgtaagtcttc ... aaatgtgcagGAGCTGTGGGTTATCTTGGTTCGAATTTGTTTGTGAGGAGGATCTACAGAA
EST: gi|38192406|gb|CF921612.1|CF921612
EST:     CTATTTTGGATACACTTTGATGTTTTGTCTTGGACTGGGAATTCTGTGTG                         GAGCTGTGGGTTATCTTGGTTCGAATTTGTTTGTGAGGAGGATCTACAGAA
genomic: CTATTTTGGATACACTTTGATGTTTTGTCTTGGACTGGGAATTCTGTGTGgtaagtcttc ... aaatgtgcagGAGCTGTGGGTTATCTTGGTTCGAATTTGTTTGTGAGGAGGATCTACAGAA
EST: gi|31308636|gb|CD393839.1|CD393839
EST:     GGGAATTCTGTGTG                         GAGCTGTGGGTTATCTTGGTTCGAATTTGTTTGTGAGGAGGATCTACAGAA
genomic: GGGAATTCTGTGTGgtaagtcttc ... aaatgtgcagGAGCTGTGGGTTATCTTGGTTCGAATTTGTTTGTGAGGAGGATCTACAGAA
EST: gi|26268557|gb|CA819620.1|CA819620
EST:     CTATTTTGGATACACTTTGATGTTTTGTCTTGGGCTGGGAATTCTGTGTG                         GAGCTGTGGGTTATCTTGGTTCGAATTTGTTTGTGAGGAGGATCTACAGAA
genomic: CTATTTTGGATACACTTTGATGTTTTGTCTTGGACTGGGAATTCTGTGTGgtaagtcttc ... aaatgtgcagGAGCTGTGGGTTATCTTGGTTCGAATTTGTTTGTGAGGAGGATCTACAGAA