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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATTGCTGGAACTTAAAGAGCAGAAACCATCAAACCTATCAGATGCTATTGTTGAACAAACACAGATATTGAAAACTAGGTCCAGGTGCTTGAAAGAGgtaatttctgacagctaaaaaaagttgtttgaattttattttagttgatttatttatttatttatggtttaaatttttttttctaatccttttcttaaaagaatgctaaatatttttttggcggttattaccctag

Basic information

species Glycine max
transcript GLYMA12G28490.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14125247|gb|BG789685.1|BG789685
EST:     TTGTTGAACAAACACAGATATTGAAAACTAGGTCCAGGTGCTTGAAAGAG                         GTTCTTGAGAAAAGTGGGTGGGACGTGCTTGAATCGTGTGCGGGTGTGTCT
genomic: TTGTTGAACAAACACAGATATTGAAAACTAGGTCCAGGTGCTTGAAAGAGgtaatttctg ... attaccctagGTTCTTGAGAAAAGTGGGTGGGACGTGCTTGAATCGTGTGCGGGTGTGTCT
EST: gi|9204213|gb|BE330437.1|BE330437
EST:     TTGTTGAACAAACACAGATATTGAAAACTAGGTCCAGGTGCTTGAAAGAG                         GTTCTTGAGAAAAGTGGGTGGGACGTGCTTGAATCG
genomic: TTGTTGAACAAACACAGATATTGAAAACTAGGTCCAGGTGCTTGAAAGAGgtaatttctg ... attaccctagGTTCTTGAGAAAAGTGGGTGGGACGTGCTTGAATCG
EST: gi|51344087|gb|CO984820.1|CO984820
EST:     TTGTTGAACAAACACAGATATTGAAAACTAGGTCCAGGTGCTTGAAAGAG                         GTTCTTGAGAAAAGTGGGTGGGACGTGCTTGAATCGTGTGCGGGTGTGTCT
genomic: TTGTTGAACAAACACAGATATTGAAAACTAGGTCCAGGTGCTTGAAAGAGgtaatttctg ... attaccctagGTTCTTGAGAAAAGTGGGTGGGACGTGCTTGAATCGTGTGCGGGTGTGTCT
EST: gi|9204219|gb|BE330443.1|BE330443
EST:     TTGTTGAACAAACACAGATATTGAAAACTAGGTCCAGGTGCTTGAAAGAG                         GTTCTTGAGAAAAGTGGGTGGGACGTGCTTGAATCGTGTGCGGGTGTGTCT
genomic: TTGTTGAACAAACACAGATATTGAAAACTAGGTCCAGGTGCTTGAAAGAGgtaatttctg ... attaccctagGTTCTTGAGAAAAGTGGGTGGGACGTGCTTGAATCGTGTGCGGGTGTGTCT
EST: gi|31459065|gb|CD401093.1|CD401093
EST:     TTGTTGAACAAACACAGATATTGAAAACTAGGTCCAGGTGCTTGAAAGAG                         GTTCTTGAGAAAAGTGGGTGGGACGTGCTTGAATCGTGTGCGGGTGTGTCT
genomic: TTGTTGAACAAACACAGATATTGAAAACTAGGTCCAGGTGCTTGAAAGAGgtaatttctg ... attaccctagGTTCTTGAGAAAAGTGGGTGGGACGTGCTTGAATCGTGTGCGGGTGTGTCT