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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATATGGCAGGACTGATAAGCAAGATAAATCGTTCATCCATTGGCCCTTTGCCTCCATGTTATTCCCCTTCCTTgtaagtttctatatgcttctgttaagattaatattcctttgtatactaccctttctgatgaaatcaggtttatgacagtgagatacctgctacttgtttaattgttcaacatcttttttatttcctctctgctaagtatcgaagttgttgactactataactacag

Basic information

species Glycine max
transcript GLYMA12G09910.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G09910.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os01g64490.1 (Oryza sativa), 5'ss of exon 12
GATATGGCAGGACTGATAAGCAAGATAAATCGTTCATCCATTGGCCCTTTGCCTCCATGTTATTCCCCTTCCTTgtaagtttctatatgcttctgttaagattaatattcctttgtatact-accctttctgatgaaatcaggtttatgacagtgagatacctgctacttgtttaattgttcaacatcttttttatttcctctctgctaagtatcgaagttgttgactactataactacag
|||||||| ||||| || || ||||||||||| || ||||||||||||||||||||||| || || || ||  |||||||    ||   ||  | |    ||| ||  | | | |  |  |  |  ||||| ||    ||  ||| || | |   |  |  || |   | ||   ||                                                                
GATATGGCTGGACTAATTAGTAAGATAAATCGCTCCTCCATTGGCCCTTTGCCTCCATGCTACTCTCCATCTATgtaagtgcacattcacta-tatctgtattgatcatacatggagtctttgctttttctcatttt-tcttgttcataaaatccaattttcttca--tcgtcatatc---------------------------------------------------------------

upper sequence: GLYMA12G09910.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G074262_T01 (Zea mays), 5'ss of exon 12
GATATGGCAGGACTGATAAGCAAGATAAATCGTTCATCCATTGGCCCTTTGCCTCCATGTTATTCCCCTTCCTTgtaagtttctatatgcttctgttaagattaatattcctttgtatactaccctttctgatgaaatcaggtttatgacagtgagatacctgctacttgtttaattgttcaacatcttttttatttcctctctgctaagtatcgaagttgttgactactataactacag
|||||||| ||||||||||| ||||||||||| || |||||||||||||||||| | |  |||||  | ||  ||||||| |  | |   | |  ||   | | | |||  |   |||   |   |||   ||  |      ||  |      || |||        || |  | |   | |  | ||  | ||     |  ||| | | ||  |                         
GATATGGCTGGACTGATAAGTAAGATAAATCGCTCCTCCATTGGCCCTTTGCCTACTTTCTATTCTTCATCTATgtaagtattga-acagtacatttggcaatgaaattggtc-atatgtaaaagttttcaatccatctttcttgtttgtttggaaata--------ttatccagtgcatgactagctaatgtaccattttactgttgaatacag-------------------------

upper sequence: GLYMA12G09910.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G137118_T01 (Zea mays), 5'ss of exon 12
GATATGGCAGGACTGATAAGCAAGATAAATCGTTCATCCATTGGCCCTTTGCCTCCATGTTATTCCCCTTCCTTgtaagtttctatatgcttctgttaagattaatattcctttgtatactaccctttctgatgaaatcaggtttatgacagtgagatacctgctacttgtttaattgttcaacatcttttttatttcctctctgctaagtatcgaagttgttgactactataactacag
|||||||| ||| | ||||||||||||||||| || ||||| || ||||||||| | ||||| ||    ||  |||||||     ||    |||      | ||  ||  | | | |    | |  || || |     || |||||  |    | |||    |  ||   ||  ||        |                                                       
GATATGGCTGGATTAATAAGCAAGATAAATCGGTCTTCCATGGGTCCTTTGCCTGCCTGTTACTCAGTGTCTATgtaagt----gtacttctctacatgaagtag-atctcgtggaagttgaacagttgtgctttg--catgtttaaaa----gtgatcttggtaaccatttctatcacatggta-------------------------------------------------------

upper sequence: GLYMA12G09910.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv06s0009g00690.t01 (Vitis vinifera), 5'ss of exon 11
GATATGGCAGGACTGATAAGCAAGATAAATCGTTCATCCATTGGCCCTTTGCCTCCATGTTATTCCCCTTCCTTgtaagtttctatatgcttctgttaagattaatattcctttgtatactaccctttctgatgaaatcaggtttatgacagtgagatacctgctacttgtttaattgttcaacatcttttttatttcctctctgctaagtatcgaagttgttgactactataactacag
|||||||| ||| | ||||| || ||||| ||||| || ||||| ||||||||  |||| ||||||||||| |||||||| || ||        ||||||||| |  |||  |||| | ||     | |  |   | || ||  |||  ||          |  |   |||  |     |   ||     |  |                                              
GATATGGCTGGATTAATAAGTAAAATAAACCGTTCTTCTATTGGTCCTTTGCCCTCATGCTATTCCCCTTCTTTgtaagtctccat--------gttaagattgaatttc--ttgtgtgcttgatatgcaaagagattctggaatatatca----------tattgtctgtgcagcaactaggcaatgcctaga----------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5058284|gb|AI736760.1|AI736760
EST:     ATAAATCGTTCATCCATTGGCCCTTTGCCTCCATGTTATTCCCCTTCCTT                         GAAAACACTGATAAAGGGCATGCTAAGAAAAAATCCTGAGCATCGGCCAAC
genomic: ATAAATCGTTCATCCATTGGCCCTTTGCCTCCATGTTATTCCCCTTCCTTgtaagtttct ... ataactacagGAAAACACTGATAAAGGGCATGCTAAGAAAAAATCCTGAGCATCGGCCAAC