Sequence
atgc intronic sequence ATGC exonic sequenceTAAAGCTGCAGACACGTGGGCAGTAGGAGTTACTTTATACTGTATGATATTGGGTGAATACCCTTTTCTTGGAGACACCCTTCAAGATACATATGACAAAgtaagaaatacacatgttttttattataattacaacaaaaatgtcattctgttttcgaaagttctcactttacaaagtttcttaactttttcacccag
Basic information
species | Glycine max |
transcript | GLYMA12G07340.4 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G07340.4 (Glycine max), 5'ss of exon 11
lower sequence: AT3G45240.1 (Arabidopsis thaliana), 5'ss of exon 9
TAAAGCTGCAGACACGTGGGCAGTAGGAGTTACTTTATACTGTATGATATTGGGTGAATACCCTTTTCTTGGAGACACCCTTCAAGATACATATGACAAAgtaagaaatacacatgttttttattataattacaacaaaaatgtcattctgttttcgaaagttctcactttacaa--agtt--tcttaactttttcacccag-------
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AAGATCTGCAGATACGTGGGCAGTAGGAGTTACTTTGTATTGTATGATTTTAGGACAATACCCATTTCTGGGTGATACACTTCAAGATACTTATGACAAGgttccgcttctctctcgctccactgatctttttattgaaa--gacatctctctagaaacaatttgaataacgcaattagttcgtgttttatcttttaccaacatcgcag
upper sequence: GLYMA12G07340.4 (Glycine max), 5'ss of exon 11
lower sequence: AT5G60550.1 (Arabidopsis thaliana), 5'ss of exon 11
TAAAGCTGCAGACACGTGGGCAGTAGGAGTTACTTTATACTGTATGATATTGGGTGAATACCCTTTTCTTGGAGACACCCTTCAAGATACATATGACAAAgtaagaaatacacatgttttttattataattacaacaaaaatgtcattctgttttcgaaagttctcactttacaaagtttcttaactttttcacccag----
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CAGAGCTGCGGATACATGGGCAGTGGGAGTTACATTGTATTGTATGATATTGGGACAATACCCGTTTCTTGCGGATACTCTTCAGGACACCTACGACAAGgttggttttacatatgatcaatgctttccttggatcttaag---aactct-ttttgaaaatcttttagcctccaatggttcataatctgttttctcttacag
upper sequence: GLYMA12G07340.4 (Glycine max), 5'ss of exon 11
lower sequence: Vv06s0004g02990.t01 (Vitis vinifera), 5'ss of exon 11
TAAAGCTGCAGACACGTGGGCAGTAGGAGTTACTTTATACTGTATGATATTGGGTGAATACCCTTTTCTTGGAGACACCCTTCAAGATACATATGACAAAgtaagaaatacacatgtttt-ttattataattaca-acaaaaatgtcattctgttttcgaaagttctcactttacaaagtttcttaactttttcacccag-----------------------------------------------------------------------------------------------
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CAAAGCTGCAGACACATGGGCTGTTGGAGTTACCTTGTACTGTATGGTGCTTGGACAATACCCATTTCTTGGAGAATCGCTGCAGGATACGTATGATAAGgtgtgtctgccacaggcattgccattttttttggggacaatattgcttccctagcccctca--ttgttgattggttaatttgttactgctgctgatcctgataccgtcccttctgttttccaattcttttcctccagtattcatttgtaagtgcattttctactttactaagcatccagtttttaccttctccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15286208|gb|BI470099.1|BI470099EST: TGGGTGAATACCCTTTTCTTGGAGACACCCTTCAAGATACATATGACAAA ATATTATACATGGCATTCATGTTTATACTGGTGCCTATATCACAATCTTAG
genomic: TGGGTGAATACCCTTTTCTTGGAGACACCCTTCAAGATACATATGACAAAgtaagaaata ... tttcacccagATATTATACATGGCATTCATGTTTATACTGGTGCCTATATCACAATCTTAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TAAAGCTGCAGACACGTGGGCAGTAGGAGTTACTTTATACTGTATGATATTGGGTGAATACCCTTTTCTTGGAGACACCCTTCAAGATACATATGACAAAgtaagaaatacacatgttttttattataattacaacaaaaatgtcattctgttttcgaaagttctcactttacaaagtttcttaactttttcacccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA