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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGATGGATTCCCCACCCTTCTCTTCTTCCCAGCAGGCAACAAGAGTTCTGACCCTgtgcgtgattattaaatgacagcgcacagtttttctattcagctatcctggattagcatgcactgtatcactagatgatctaatatgtatctgtttcattgtatatgcag

Basic information

species Glycine max
transcript GLYMA12G07260.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G07260.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv06s0004g02890.t01 (Vitis vinifera), 5'ss of exon 11
TCTGATGGATTCCCCACCCTTCTCTTCTTCCCAGCAGGCAACAAGAGTTCTGACCCTgtgcgtgattatt--aaatg-acagcgcacagtttttc------tattcagctatcctggattagcatgcactgtatcactagatgatctaatatgtatc-tgtttcattgtatatgcag
|||||||| |||||||| ||||| |||||||||||||| |||||||||||||| || ||  || ||  ||  ||||   ||       ||||| |      ||||| ||| |||| |||    |||    |  |   |     | |||||  | ||| ||  |  | | |       
TCTGATGGGTTCCCCACACTTCTATTCTTCCCAGCAGGAAACAAGAGTTCTGATCCAgtaagtcatgcttcaaaatatgcaatctggggttttcccttgaatattctgctttcctagatctatatgt-tggcttttttcccctagctaatggggatcctgggttttggcag------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151396998|gb|EV266871.1|EV266871
EST:     GATTCCCCACCCTTCTCTTCTTCCCAGCAGGCAACAAGAGTTCTGACCCT                         ATTCCTGTTGATGTGGATCATACAGTGAAAGCCTTTTATAAGTTCCTCAGG
genomic: GATTCCCCACCCTTCTCTTCTTCCCAGCAGGCAACAAGAGTTCTGACCCTgtgcgtgatt ... gtatatgcagATTCCTGTTGATGTGGATCATACAGTGAAAGCCTTTTATAAGTTCCTCAGG
EST: gi|31457199|gb|CD399227.1|CD399227
EST:     GATTCCCCACCCTTCTCTTCTTCCCAGCAGGCAACAAGAGTTCTGACCCT                         ATTCCTGTTGATGTGGATCATACAGTGAAAGCCTTTTATAAGTTCCTCAGG
genomic: GATTCCCCACCCTTCTCTTCTTCCCAGCAGGCAACAAGAGTTCTGACCCTgtgcgtgatt ... gtatatgcagATTCCTGTTGATGTGGATCATACAGTGAAAGCCTTTTATAAGTTCCTCAGG
EST: gi|10255319|gb|BE823085.1|BE823085
EST:     CAAGAGTTCTGACCCT                         ATTCCTGTTGATGTGGATCATACAGTGAAAGCCTTTTATAAGTTCCTCAGG
genomic: CAAGAGTTCTGACCCTgtgcgtgatt ... gtatatgcagATTCCTGTTGATGTGGATCATACAGTGAAAGCCTTTTATAAGTTCCTCAGG
EST: gi|15814196|gb|BI786471.1|BI786471
EST:     GATTCCCCACCCTTCTCTTCTTCCCAGCAGGCAACAAGAGTTCTGACCCT                         ATTCCTGTTGATGTGGATCATACAGTGAAAGCCTTTTATAAGTTCCTCAGG
genomic: GATTCCCCACCCTTCTCTTCTTCCCAGCAGGCAACAAGAGTTCTGACCCTgtgcgtgatt ... gtatatgcagATTCCTGTTGATGTGGATCATACAGTGAAAGCCTTTTATAAGTTCCTCAGG
EST: gi|15814100|gb|BI786375.1|BI786375
EST:     GATTCCCCACCCTTCTCTTCTTCCCAGCAGGCAACAAGAGTTCTGACCCT                         ATTCCTGTTGATGTGGATCATACAGTGAAAGCCTTTTATAAGTTCCTCAGG
genomic: GATTCCCCACCCTTCTCTTCTTCCCAGCAGGCAACAAGAGTTCTGACCCTgtgcgtgatt ... gtatatgcagATTCCTGTTGATGTGGATCATACAGTGAAAGCCTTTTATAAGTTCCTCAGG