1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GAAATTATTTGTCAATCACAAGACAATGGAGTGCTAGTGACAAGCTGACCCTTCAGCTGCCCCTTACCGTAAGGACAGAGGCCATAAAAGgtagcttcacaagataatcctgaagtgttgatcactatttactagtattcttcgatcatttctaacaaaaaaattggttacgttactgatactttttttgaactaaattcag
species | Glycine max |
transcript | GLYMA12G05980.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CAAGCTGACCCTTCAGCTGCCCCTTACCGTAAGGACAGAGGCCATAGAAG ATGACAGGCCTGAATATGCATCTGTTCAAGCAATTCTTTATGGTCCTTACCEST: gi|193635161|gb|FK580722.1|FK580722
genomic: CAAGCTGACCCTTCAGCTGCCCCTTACCGTAAGGACAGAGGCCATAAAAGgtagcttcac ... ctaaattcagATGACAGGCCTGAATATGCATCTGTTCAAGCAATTCTTTATGGTCCTTACC
EST: CAAGCTGACCCTTCAGCTGCCCCTTACCGTAAGGACAGAGGCCATAAAAG ATGACAGGCCTGAATATGCATCTGTTCAAGCAATTCTTTAEST: gi|208326918|gb|GE123666.1|GE123666
genomic: CAAGCTGACCCTTCAGCTGCCCCTTACCGTAAGGACAGAGGCCATAAAAGgtagcttcac ... ctaaattcagATGACAGGCCTGAATATGCATCTGTTCAAGCAATTCTTTA
EST: CCCTTCAGCTGCCCCTTACCGTAAGGACAGAGGCCATAAAAG ATGACAGGCCTGAATATGCATCTGTTCAAGCAATTCTTTATGGTCCTTACCEST: gi|208123454|gb|GD924076.1|GD924076
genomic: CCCTTCAGCTGCCCCTTACCGTAAGGACAGAGGCCATAAAAGgtagcttcac ... ctaaattcagATGACAGGCCTGAATATGCATCTGTTCAAGCAATTCTTTATGGTCCTTACC
EST: CAAGCTGACCCTTCAGCTGCCCCTTACCGTAAGGACAGAGGCCATAAAAG ATGACAGGCCTGAATATGCATCTGTTCAAGCAATTCTTTATGGTCCTTACC
genomic: CAAGCTGACCCTTCAGCTGCCCCTTACCGTAAGGACAGAGGCCATAAAAGgtagcttcac ... ctaaattcagATGACAGGCCTGAATATGCATCTGTTCAAGCAATTCTTTATGGTCCTTACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAATTATTTGTCAATCACAAGACAATGGAGTGCTAGTGACAAGCTGACCCTTCAGCTGCCCCTTACCGTAAGGACAGAGGCCATAAAAGgtagcttcacaagataatcctgaagtgttgatcactatttactagtattcttcgatcatttctaacaaaaaaattggttacgttactgatactttttttgaactaaattcag
- - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC