1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTTGACAAAAACGATCCCAATGCAACAAAAACATTGAGCAGGCTGGAAGCTATACAGAAAACTTGCAGAGAATCTGGTCTCTTAAGTAAAAGgtatgcacataactgagtagcttcaaaagtactttatctttttatcattgacagtctaacaaccctttcattgatttaagcag
species | Glycine max |
transcript | GLYMA12G04220.3 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CTGGAAGCTATACAGAAAACTTGCAGAGAATCTGGTCTCTTAAGTAAAAG GAAATCTTACATTGTGAATGATGAAAGTGGATATGGCTCAACCATGEST: gi|207798680|gb|GD769093.1|GD769093
genomic: CTGGAAGCTATACAGAAAACTTGCAGAGAATCTGGTCTCTTAAGTAAAAGgtatgcacat ... atttaagcagGAAATCTTACATTGTGAATGATGAAAGTGGATATGGCTCAACCATG
EST: CTGGAAGCTATACAGAAAACTTGCAGAGAATCTGGTCTCTTAAGTAAAAG GAAATCTTACATTGTGAATGATGAA-GTGGATATGGCTCAACCATGEST: gi|13482207|gb|BG511550.1|BG511550
genomic: CTGGAAGCTATACAGAAAACTTGCAGAGAATCTGGTCTCTTAAGTAAAAGgtatgcacat ... atttaagcagGAAATCTTACATTGTGAATGATGAAAGTGGATATGGCTCAACCATG
EST: CTGGAAGCTATACAGAAAACTTGCAGAGAATCTGGTCTCTTAAGTAAAAG GAAATCTTACATTGTGA
genomic: CTGGAAGCTATACAGAAAACTTGCAGAGAATCTGGTCTCTTAAGTAAAAGgtatgcacat ... atttaagcagGAAATCTTACATTGTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGACAAAAACGATCCCAATGCAACAAAAACATTGAGCAGGCTGGAAGCTATACAGAAAACTTGCAGAGAATCTGGTCTCTTAAGTAAAAGgtatgcacataactgagtagcttcaaaagtactttatctttttatcattgacagtctaacaaccctttcattgatttaagcag
- - - - - - - - - - - - - - - - - - - - - TGGAAG