Sequence
atgc intronic sequence ATGC exonic sequenceCATCATGCATTACCATATCACATCGTCCAGCATTGGTTGCTTTCCATGATGTGGTTTTATCCTTAGATGGTGAAGGAGGATGGAGTGTTCATTATAAAAGgttggaaatttactgtgctgtttaacattgttttactttggagttatgttattgtttgagattaagatttaaactccag
Basic information
species | Glycine max |
transcript | GLYMA11G38160.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G38160.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G375807_T01 (Zea mays), 5'ss of exon 9
CATCATGCATTACCATATCACATCGTCCAGCATTGGTTGCTTTCCATGATGTGGTTTTATCCTTAGATGGTGAAGGAGGATGGAGTGTTCATTATAAAAGgttggaaatttactgtgctgtttaacattgttttactttggagttatgttattgtttgag--attaagatttaaactccag--------
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CATCTTGCATAACAATATCTCACCGTCCAGCATTAGTTGCGTTTCATGAAATTGTTTTATCCTTAGATGGTGAAGGAGGGTGGGATATTCAGGACAACAGgttacagaaatatacttctattttctttctttttattttaaattttgagcactgaaaaagcaatgttgaatttgattttattcttttag
upper sequence: GLYMA11G38160.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G060045_T01 (Zea mays), 5'ss of exon 9
CATCATGCATTACCATATCACATCGTCCAGCATTGGTTGCTTTCCATGATGTGGTTTTATCCTTAGATGGTGAAGGAGGATGGAGTGTTCATTATAAAAGgttggaaatt----------tactgtgctgtttaacattgttttactttggagttatgttattgtttgagattaagatttaaactccag---
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CATCCTGCATAACAATATCTCATCGACCAGCTTTAGTTGCATTTCATGATATTGTTTTATCCTTGGACGGTGAAGGAGGTTGGAATGTTCAGCATAGAAGgttaaaacttatagcccttgagataagttgtcaaatgtttgttcttccaaaaattggttcactaaaaaatagtaatacacctaattttgcag
upper sequence: GLYMA11G38160.1 (Glycine max), 5'ss of exon 11
lower sequence: AT4G39850.2 (Arabidopsis thaliana), 5'ss of exon 10
CATCATGCATTACCATATCACATCGTCCAGCATTGGTTGCTTTCCATGATGTGGTTTTATCCTTAGATGGTGAAGGAGGATGGAGTGTTCATTATAAAAGgttggaaattt------actgtgctgtttaacattgttttactttggagttatgttattgtttgagattaagatttaaactccag
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CTTCTTGCATAACAATCTCCCATCGTCCAGCGCTTGTTGCATTCCATGATGTTGTTCTGTCATTAGACGGTGAAGGAGGATGGAGTGTTCATTACAAGAGgttgggattgtttcttagccatgtttgtgagaattattaaagtttatttttat-ttacttattaaaat---gactaaaccttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|13788137|gb|BG650729.1|BG650729EST: GTGGTTTTATCCTTAGATGGTGAAGGAGGATGGAGTGTTCATTATAAAAG GGAGGGCTCTTCTACTGAAGTGGGGATTGATACGATGAAGGCATCAGAAAC
genomic: GTGGTTTTATCCTTAGATGGTGAAGGAGGATGGAGTGTTCATTATAAAAGgttggaaatt ... taaactccagGGAGGGCTCTTCTACTGAAGTGGGGATTGATACGATGAAGGCATCAGAAAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CATCATGCATTACCATATCACATCGTCCAGCATTGGTTGCTTTCCATGATGTGGTTTTATCCTTAGATGGTGAAGGAGGATGGAGTGTTCATTATAAAAGgttggaaatttactgtgctgtttaacattgttttactttggagttatgttattgtttgagattaagatttaaactccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA