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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAATATGTGTTGGATTTTATTGTTGAGAGGAAGAAAACTAATGATCTATGCAGTTCAATCCGGGATAACCGCTATAAGGATCAAAAACTAAGACTTCTGgtaattattccttcttaaatagatagaattgtttcttgacaatataaatggtttgaacatgtgatggcaagcatatgcatatatatggtcacagattaat...

Basic information

species Glycine max
transcript GLYMA11G20970.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G20970.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv13s0019g01290.t01 (Vitis vinifera), 5'ss of exon 11
TGAATATGTGTTGGATTTTATTGTTGAGAGGAAGAAAACTAATGATCTATGCAGTTCAATCCGGGATAACCGCTATAAGGATCAAAAACTAAGACTTCTGgtaattattccttcttaaatagatagaattgtttcttgacaatataaatggtttgaacatgtgatggcaagcatatgcatatatatggtcacagattaat---
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TGAATATGTTCTTGATTTTATTGTTGAGAGGAAGAATGTTAATGATTTACGCTGTTCAATCAGGGATAATCGCTACAAGGATCAGAAGTTAAGGCTTTTGgtactgatttttactggaata-actgaatggtttattgaaatttagtaaggtc--attatcgtttgtcatatgtatgtgtggtgagaggactatgttagacct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51343470|gb|CO984203.1|CO984203
EST:     GCAGTTCAATCCGGGATAACCGCTATAAGGATCAAAAACTAAGACTTCTG                         AGGTGTGGGCTGAAGAAGCTGATATATCTTGTGGAAGGTGACCCAAATTCT
genomic: GCAGTTCAATCCGGGATAACCGCTATAAGGATCAAAAACTAAGACTTCTGgtaattattc ... tcattgttagAGGTGTGGGCTGAAGAAGCTGATATATCTTGTGGAAGGTGACCCAAATTCT