1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TGATAATGCTGGTTTGGACAGTGCTGAGTTGATTTCTCAACTCCGGGCAGAGCATCAGAAGGAGGGCTGTACTTCTGGAATTGATGTTATTTCTGGCTCTgtaagtactgaaactagaactgtgaatttatttgagtgggcatcgtttttgaattgctacatctggatgtatgatattgccacatttcctttttctcttg...
species | Glycine max |
transcript | GLYMA11G19220.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: AGCATCAGAAGGAGGGCTGTACTTCTGGAATTGATGTTATTTCTGGCTCT GTTGGAGACATGGCTGAACGCGGAATATCTGAAGCATTCAAAGTCAAGCAAEST: gi|15285688|gb|BI469579.1|BI469579
genomic: AGCATCAGAAGGAGGGCTGTACTTCTGGAATTGATGTTATTTCTGGCTCTgtaagtactg ... tttctggtagGTTGGAGACATGGCTGAACGCGGAATATCTGAAGCATTCAAAGTCAAGCAA
EST: AGCATCAGAAGGAGGGCTGTACTTCTGGAATTGATGTTATTTCTGGCTCT GTTGGAGACATGGCTGAACGCGGAATATCTGAAGCATTCAAAGTCAAGCAAEST: gi|31305141|gb|CD390344.1|CD390344
genomic: AGCATCAGAAGGAGGGCTGTACTTCTGGAATTGATGTTATTTCTGGCTCTgtaagtactg ... tttctggtagGTTGGAGACATGGCTGAACGCGGAATATCTGAAGCATTCAAAGTCAAGCAA
EST: AGCATCAGAAGGAGGGCTGTACTTCTGGAATTGATGTTATTTCTGGCTCT GTTGGAGACATGGCTGAACGCGGAATATCTGAAGCATTCAAAGTCAAGCAAEST: gi|254325805|gb|GR838686.1|GR838686
genomic: AGCATCAGAAGGAGGGCTGTACTTCTGGAATTGATGTTATTTCTGGCTCTgtaagtactg ... tttctggtagGTTGGAGACATGGCTGAACGCGGAATATCTGAAGCATTCAAAGTCAAGCAA
EST: AGCATCAGAAGGAGGGCTGTACTTCTGGAATTGATGTTATTTCTGGCTCT GTTGGAGACATGGCTGAACGCGGAATATCTGAAGCATTCAAAGTCAAGCAAEST: gi|254321099|gb|GR827548.1|GR827548
genomic: AGCATCAGAAGGAGGGCTGTACTTCTGGAATTGATGTTATTTCTGGCTCTgtaagtactg ... tttctggtagGTTGGAGACATGGCTGAACGCGGAATATCTGAAGCATTCAAAGTCAAGCAA
EST: AGCATCAGAAGGAGGGCTGTACTTCTGGAATTGATGTTATTTCTGGCTCT GTTGGAGACATGGCTGAACGCGGAATATCTGAAGCATTCAAAGTCAAGCAAEST: gi|31561195|gb|CD487033.1|CD487033
genomic: AGCATCAGAAGGAGGGCTGTACTTCTGGAATTGATGTTATTTCTGGCTCTgtaagtactg ... tttctggtagGTTGGAGACATGGCTGAACGCGGAATATCTGAAGCATTCAAAGTCAAGCAA
EST: AGCATCAGAAGGAGGGCTGTACTTCTGGAATTGATGTTATTTCTGGCTCT GTTGGAGACATGGCTGAACGCGGAATATCTGAAGCATTCAAAGTCAAGCAAEST: gi|6481479|gb|AW200750.1|AW200750
genomic: AGCATCAGAAGGAGGGCTGTACTTCTGGAATTGATGTTATTTCTGGCTCTgtaagtactg ... tttctggtagGTTGGAGACATGGCTGAACGCGGAATATCTGAAGCATTCAAAGTCAAGCAA
EST: AGCATCAGAAGGAGGGCTGTTCTTCTGGAATTTATGTTATTTCTGGCTCT GTTGGAGACATGGCTGAACGCGGAATATCTGAAGCATTCAAAGTCAAGCAAEST: gi|15815109|gb|BI787384.1|BI787384
genomic: AGCATCAGAAGGAGGGCTGTACTTCTGGAATTGATGTTATTTCTGGCTCTgtaagtactg ... tttctggtagGTTGGAGACATGGCTGAACGCGGAATATCTGAAGCATTCAAAGTCAAGCAA
EST: AGCATCAGAAGGAGGGCTGTACTTCTGGAATTGATGTTATTTCTGGCTCT GTTGGAGACATGGCTGAACGCGGAATATCTGAAGCATTCAAAGTCAAGCAAEST: gi|18735298|gb|BM528684.1|BM528684
genomic: AGCATCAGAAGGAGGGCTGTACTTCTGGAATTGATGTTATTTCTGGCTCTgtaagtactg ... tttctggtagGTTGGAGACATGGCTGAACGCGGAATATCTGAAGCATTCAAAGTCAAGCAA
EST: AGCATCAGAAGGAGGGCTGTACTTCTGGAATTGATGTTATTTCTGGCTCT GTTGGAGACATGGCTGAACGCGGAATATCTGAAGCATTCAAAGTCAAGCAA
genomic: AGCATCAGAAGGAGGGCTGTACTTCTGGAATTGATGTTATTTCTGGCTCTgtaagtactg ... tttctggtagGTTGGAGACATGGCTGAACGCGGAATATCTGAAGCATTCAAAGTCAAGCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATAATGCTGGTTTGGACAGTGCTGAGTTGATTTCTCAACTCCGGGCAGAGCATCAGAAGGAGGGCTGTACTTCTGGAATTGATGTTATTTCTGGCTCTgtaagtactgaaactagaactgtgaatttatttgagtgggcatcgtttttgaattgctacatctggatgtatgatattgccacatttcctttttctcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG