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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTAAGGATCCGAACATTGCAATTTGGTGTTGCTCAGAACATTCATGAACTTTATGATAGCTGTGATCCCGAAGTTGTTCTATCTTTGCTTGTTCACAAGgtgaatttataaaatcaaccttacttctatgccatttggattgatgttttttttggttccactcttcaaactaaattctgaatgtggtatgcttgcttca...

Basic information

species Glycine max
transcript GLYMA11G18930.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G18930.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv06s0080g00510.t01 (Vitis vinifera), 5'ss of exon 11
GCTAAGGATCCGAACATTGCAATTTGGTGTTGCTCAGAACATTCATGAACTTTATGATAGCTGTGATCCCGAAGTTGTTCTATCTTTGCTTGTTCACAAGgtgaatttataaaatcaaccttacttctatgccatttggattgatgttttttttggttccactcttcaaactaaattctgaatgtggtatgcttgc---ttca-
 || || || || |||||||||| |     |||||| || |    |||||||||||| ||   |||||| ||||| ||||||||  |||||||||||||||| | ||| |    |    ||   |  |     || |   |   | ||||  ||  |   | | |   |     ||| || |    |||  |  |     ||| 
ACTGAGAATTCGGACATTGCAATATTTATCTGCTCAAAATAGCAGTGAACTTTATGACAGTGTTGATCCTGAAGTGGTTCTATCAGTGCTTGTTCACAAGgttattttct----tttctctccttcttgcttgatgttattccttattttccttactggtattgtggcactctcattttgcaccatgtaaacaaggaagctcat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18712711|gb|BM522679.1|BM522679
EST:     TTTATGATAGCTGTGATCCCGAAGTTGTTCTATCTTTGCTTGTTCACAAG                         GTTATATTAGCCTCTTTGGAGGAAGGAGTTAGGGAGGGTAGAATTTTGCTT
genomic: TTTATGATAGCTGTGATCCCGAAGTTGTTCTATCTTTGCTTGTTCACAAGgtgaatttat ... tattctgcagGTTATATTAGCCTCTTTGGAGGAAGGAGTTAGGGAGGGTAGAATTTTGCTT
EST: gi|16105025|gb|BI892765.1|BI892765
EST:     TTTATGATAGCTGTGATCCCGAAGTTGTTCTATCTTTGCTTGTTCACAAG                         GTTATATTAGCCTCTTTGGAGGAAGGAGTTAGGGAGGGTAGAATTTTGCTT
genomic: TTTATGATAGCTGTGATCCCGAAGTTGTTCTATCTTTGCTTGTTCACAAGgtgaatttat ... tattctgcagGTTATATTAGCCTCTTTGGAGGAAGGAGTTAGGGAGGGTAGAATTTTGCTT