1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CTGATTCTTTCCCGAATTAAGGTTCATTTGAATGCATTGAAAAAGTACACCTATGGAAAACACATCGTCACGCGTGTAGAAAAACTTGTTGCTGCTGGAGgtacttactccttctatatatcatctcttcatttgcattctcacacgatcttatatttcagcatccgtgcatgtgcacaacacgacatacacacttgaagaccaagccattctcctgcttctaatatgcacatgtaatttgttgcag
species | Glycine max |
transcript | GLYMA11G14550.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CTATGGAAAACACATCGTCACGCGTGTAGAAAAACTTGTTGCTGCTGGAG AAAGGAGAATAGCTGCTCAGGCTCCTCCTCAACCTGCTTAGGTGGCTTAGAEST: gi|193635960|gb|FK581225.1|FK581225
genomic: CTATGGAAAACACATCGTCACGCGTGTAGAAAAACTTGTTGCTGCTGGAGgtacttactc ... tttgttgcagAAAGGAGAATAGCTGCTCAGGCTCCTCCTCAACCTGCTTAGGTGGCTTAGA
EST: CTATGGAAAACACATCGTCACGCGTGTAGAAAAACTTGTTGCTGCTGGAG AAAGGAGAATAGCTGCTCAGGCTCCTCCTCAACCTGCTTAGGTGGCTTAGAEST: gi|21993800|gb|BQ785328.1|BQ785328
genomic: CTATGGAAAACACATCGTCACGCGTGTAGAAAAACTTGTTGCTGCTGGAGgtacttactc ... tttgttgcagAAAGGAGAATAGCTGCTCAGGCTCCTCCTCAACCTGCTTAGGTGGCTTAGA
EST: CTATGGAAAACACATCGTCACGCGTGTAGAAAAACTTGTTGCTGCTGGAG AAAGGAGAATAGCTGCTCAGGCTCCTCCTCAACCTGCTTAGGTGGCTTAGAEST: gi|21602306|gb|BQ612637.1|BQ612637
genomic: CTATGGAAAACACATCGTCACGCGTGTAGAAAAACTTGTTGCTGCTGGAGgtacttactc ... tttgttgcagAAAGGAGAATAGCTGCTCAGGCTCCTCCTCAACCTGCTTAGGTGGCTTAGA
EST: CTATGGAAAACACATCGTCACGCGTGTAGAAAAACTTGTTGCTGCTGGAG AAAGGAGAATAGCTGCTCAGGCTCCTCCTCAACCTGCTTAGGTGGCTTAGA
genomic: CTATGGAAAACACATCGTCACGCGTGTAGAAAAACTTGTTGCTGCTGGAGgtacttactc ... tttgttgcagAAAGGAGAATAGCTGCTCAGGCTCCTCCTCAACCTGCTTAGGTGGCTTAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGATTCTTTCCCGAATTAAGGTTCATTTGAATGCATTGAAAAAGTACACCTATGGAAAACACATCGTCACGCGTGTAGAAAAACTTGTTGCTGCTGGAGgtacttactccttctatatatcatctcttcatttgcattctcacacgatcttatatttcagcatccgtgcatgtgcacaacacgacatacacacttgaagaccaagccattctcctgcttctaatatgcacatgtaatttgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA