1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GTTGACAAAAATGATCCCAATGCAACTAAAGCATTGAGCAGGCTGGAAGCTATACAGAAAACTTGCAGAGAATCTGGTCTCTTGAGTAAAAGgtatgcacataaccgagtagctacaaaagtactttatctttttatcgttgacagtctagcaaccctttcattgatttaagcag
species | Glycine max |
transcript | GLYMA11G11960.3 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CTGGAAGCTATACAGAAAACTTGCAGAGAATCTGGTCTCTTGAGTAAAAG GAAATCTTACATTGTGAAGGATGAAAGTGGATATGGCTCAACCATGEST: gi|209726038|gb|BW672761.1|BW672761
genomic: CTGGAAGCTATACAGAAAACTTGCAGAGAATCTGGTCTCTTGAGTAAAAGgtatgcacat ... atttaagcagGAAATCTTACATTGTGAAGGATGAAAGTGGATATGGCTCAACCATG
EST: CTGGAAGCTATACAGAAAACTTGCAGAGAATCTGGTCTCTTGAGTAAAAG GAAATCTTACATTGTGAAGGATGAAAGTGGATATGGCTCAACCATGEST: gi|22930235|gb|BU547374.1|BU547374
genomic: CTGGAAGCTATACAGAAAACTTGCAGAGAATCTGGTCTCTTGAGTAAAAGgtatgcacat ... atttaagcagGAAATCTTACATTGTGAAGGATGAAAGTGGATATGGCTCAACCATG
EST: CTGGAAGCTATACAGAAAACTTGCAGAGAATCTGGTCTCTTGAGTAAAAG GAAATCTTACATTGTGAAGGATGAAAGTGGATATGGCTCAACCATGEST: gi|7478069|gb|AW666124.1|AW666124
genomic: CTGGAAGCTATACAGAAAACTTGCAGAGAATCTGGTCTCTTGAGTAAAAGgtatgcacat ... atttaagcagGAAATCTTACATTGTGAAGGATGAAAGTGGATATGGCTCAACCATG
EST: TGGAAGCTATACAGAAAACTTGCAGAGAAGTCTG-TCTCTTGAGTGAAAG GAGATCTTACATTGTGAAGGATGACAGTGGATATGGCTCAACCATGATEST: gi|9899890|gb|BE608858.1|BE608858
genomic: TGGAAGCTATACAGAAAACTTGCAGAGAA-TCTGGTCTCTTGAGTAAAAGgtatgcacat ... atttaagcagGAAATCTTACATTGTGAAGGATGAAAGTGGATATGGCTCAACCATGAT
EST: CTGGAAGCTATACAGAAAACTTGCAGAGAATCTGGTCTCTTGAGTAAAAG GAAATCTTACATTGTGAAGGATGAAAGTGGATATGGCTCAACCATGEST: gi|58014892|gb|CX701634.1|CX701634
genomic: CTGGAAGCTATACAGAAAACTTGCAGAGAATCTGGTCTCTTGAGTAAAAGgtatgcacat ... atttaagcagGAAATCTTACATTGTGAAGGATGAAAGTGGATATGGCTCAACCATG
EST: CTGGAAGCTATACAGAAAACTTGCAGAGAATCTGGTCTCTTGAGTAAAAG GAAATCTTACATTGTGAAGGATGAAAGTGGATATGGCTCAACCATGEST: gi|120491021|gb|EH219188.1|EH219188
genomic: CTGGAAGCTATACAGAAAACTTGCAGAGAATCTGGTCTCTTGAGTAAAAGgtatgcacat ... atttaagcagGAAATCTTACATTGTGAAGGATGAAAGTGGATATGGCTCAACCATG
EST: CTGGAAGCTATACAGAAAACTTGCAGAGAATCTGGTCTCTTGAGTAAAAG GAAATCTTACATTGTGAAGGATGAAAGTGGATATGGCTCAACCATGEST: gi|9899883|gb|BE608851.1|BE608851
genomic: CTGGAAGCTATACAGAAAACTTGCAGAGAATCTGGTCTCTTGAGTAAAAGgtatgcacat ... atttaagcagGAAATCTTACATTGTGAAGGATGAAAGTGGATATGGCTCAACCATG
EST: CTGGAAGCTATACAGAAAACTTGCAGAGAATCTGGTCTCTTGAGTAAAAG GAAATCTTACATTGTGAAGGATGAAAGTGGATATGGCTCAACCATGEST: gi|17153400|gb|BM143333.1|BM143333
genomic: CTGGAAGCTATACAGAAAACTTGCAGAGAATCTGGTCTCTTGAGTAAAAGgtatgcacat ... atttaagcagGAAATCTTACATTGTGAAGGATGAAAGTGGATATGGCTCAACCATG
EST: CTGGAAGCTATACAGAAAACTTGCAGAGAATCTGGTCTCTTGAGTAAAAG GAAATCTTACATTGTGAAGGATGAAAGTGGATATGGCTCAACCATGEST: gi|209714967|gb|BW650813.1|BW650813
genomic: CTGGAAGCTATACAGAAAACTTGCAGAGAATCTGGTCTCTTGAGTAAAAGgtatgcacat ... atttaagcagGAAATCTTACATTGTGAAGGATGAAAGTGGATATGGCTCAACCATG
EST: CTGGAAGCTATACAGAAAACTTGCAGAGAATCTGGTCTCTTGAGTAAAAG GAAATCTTACATTGTGAAGGATGAAAGTGGATATGGCTCAACCATGEST: gi|209722770|gb|BW682868.1|BW682868
genomic: CTGGAAGCTATACAGAAAACTTGCAGAGAATCTGGTCTCTTGAGTAAAAGgtatgcacat ... atttaagcagGAAATCTTACATTGTGAAGGATGAAAGTGGATATGGCTCAACCATG
EST: CTGGAAGCTATACAGAAAACTTGCAGAGAATCTGGTCTCTTGAGTAAAAG GAAATCTTACATTGTGAAGGATGAAAGTGGATATGGCTCAACCATG
genomic: CTGGAAGCTATACAGAAAACTTGCAGAGAATCTGGTCTCTTGAGTAAAAGgtatgcacat ... atttaagcagGAAATCTTACATTGTGAAGGATGAAAGTGGATATGGCTCAACCATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGACAAAAATGATCCCAATGCAACTAAAGCATTGAGCAGGCTGGAAGCTATACAGAAAACTTGCAGAGAATCTGGTCTCTTGAGTAAAAGgtatgcacataaccgagtagctacaaaagtactttatctttttatcgttgacagtctagcaaccctttcattgatttaagcag
- - - - - - - - - - - - - - - - - - - - - TGGAAG