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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTGTCCAAGGAATGCCTCTTGTCCAGGGCTCAGACAAATACTTTTGGTTTGGTCAACCACAGTTAGTTCTTCATGTTATTCATTTTGCTTTGTTCCAGgtattcagtgggttttcttttagtaaaaactagtcaaattacaaatgtttttgatacggaatagacaatttattagttattacatctgagatttgtagtt...

Basic information

species Glycine max
transcript GLYMA11G09270.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G09270.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv07s0031g02240.t01 (Vitis vinifera), 5'ss of exon 11
AGTTGTCCAAGGAATGCCTCTTGTCCAGGGCTCAGACAAATACTTTTGGTTTGGTCAACCACAGTTAGTTCTTCATGTTATTCATTTTGCTTTGTTCCAGgtattcagtgggttttcttttagtaaaaactagtcaaattacaaatgtttttgatacggaatagacaatttattagttattacatctgagatttgtagtt-------------------------------------------------------------------------------------------
||| |||||||| || || ||||| || |||||||||||||| ||||||||| ||   || ||||||||||||||| |||| ||||||| |||||| |||||| | ||  |    ||  |     ||||  |   |  |   |||| || |  | ||  |  |||  |||  ||   |   |  ||   | |   |   |                                                                                           
AGTGGTCCAAGGGATTCCGCTTGTGCAAGGCTCAGACAAATATTTTTGGTTTAGTTGGCCTCAGTTAGTTCTTCATCTTATCCATTTTGTTTTGTTTCAGgtactgagcagcacctccat--actaaaatgaactagttcgtaaattttgtaaaaacttagcaga--attctttgagttcaatgtccttgttcattgacttgcttgtgtcatatttatgtcactaatgaaagtagagaaagctacttttcttccactaatggctatctaattgactttttggtgcatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193421444|gb|FK389617.1|FK389617
EST:     TTGGTCAACCACAGTTAGTTCTTCATGTTATTCATTTTGCTTTGTTCCAG                         AACGCATTCCAAATAACATATATCTTGTGGATATGG
genomic: TTGGTCAACCACAGTTAGTTCTTCATGTTATTCATTTTGCTTTGTTCCAGgtattcagtg ... acactcgcagAACGCATTCCAAATAACATATATCTTGTGGATATGG