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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCACAAAATCAAGAAGTTTGTGTTACACACCAACTTCCCTGGTCATGCTGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATTgtaagcaatctcttatttgcattgcagtgtttagtttggccttgatgtaacagatgtaaatttttgttgtgaaatagtgatgaaatatatttttggcctttccag

Basic information

species Glycine max
transcript GLYMA11G07910.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G07910.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os06g49990.3 (Oryza sativa), 5'ss of exon 11
ACTCACAAAATCAAGAAGTTTGTGTTACACACCAACTTCCCTGGTCATGCTGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATTgtaagcaatctcttatttgcattgcagtgtttagtttggccttgatgtaacagatgtaaatttttgttgtgaaatagtgatgaaatatatttttggcctttccag
|| ||||  || ||||||||||| |||||||| ||||||||||||||| | ||||||||||| || || ||||| ||||||||| ||||||   | ||  ||  | |      || ||||  || ||  || ||||||   |  |   | ||  |  |   | ||      |  |  |||| |                      
ACACACAGGATAAAGAAGTTTGTTTTACACACAAACTTCCCTGGTCATTCAGATTTCAATTCCTATATGAAGTGTAACTTTGTTATCTATGATGCCGAAGgtctgaa-----ctacttgc--tgtagaatt-agtttgttgtgaagaaaccaactacatcctattaactatatgtcttgatcag---------------------

upper sequence: GLYMA11G07910.1 (Glycine max), 5'ss of exon 11
lower sequence: AT3G51130.1 (Arabidopsis thaliana), 5'ss of exon 11
ACTCACAAAATCAAGAAGTTTGTGTTACACACCAACTTCCCTGGTCATGCTGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATTg--taagcaatctcttatttgcattgcagtgtttagtttggccttgatgtaacagatgtaaatttttgttgtgaaatagtgatgaaatat-atttttggcctttccag
||||||||| | || ||||||||  | ||||||||||  || ||||||||||||||||| || ||||| ||||||||||||||  | |  ||  |  | |   || | |    || || |   |     | || | |     || ||| ||   | |||  ||||||      ||     | |   || | | ||||           
ACTCACAAAGTTAAAAAGTTTGTTCTTCACACCAACTATCCGGGTCATGCTGATTTCAACTCATACATAAAGTGCAACTTTGTGATTTCGGgtacgtaatacttatgaagcagctcatgtcagtcaatatattcaata----ctcgatata--tgttgtctatttttccaacaaacctacgctttcatgtcacttttcag--------

upper sequence: GLYMA11G07910.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv04s0023g02970.t01 (Vitis vinifera), 5'ss of exon 11
ACTCACAAAATCAAGAAGTTTGTGTTACACACCAACTTCCCTGGTCATGCTGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATTgtaagcaatctcttatttgcattgcagtgtttagtttggccttgatgtaacagatgtaaatttttgttgtgaaatagtgatgaaatatatttttggcctttccag
||||| ||||||||||| ||||| || ||||| ||||  ||||| ||||| ||||| ||||| ||||| || |||||||||||| ||||||| || |||||||||   ||| || ||    ||  |   |||    |    ||  |  |||||   | |   ||  || |       |  |   |||||                
ACTCATAAAATCAAGAAATTTGTCTTGCACACAAACTATCCTGGGCATGCAGATTTTAATTCATACATGAAATGCAACTTTGTTATCTATGGTTCTGATTgtaagt--tctgtt-ttcatttttaatcatttcacataaagtttgt-caacagggctgataattatttatttttattttcttgcatatag---------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51343377|gb|CO984110.1|CO984110
EST:     TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATT                         ---TAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTA
genomic: TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATTgtaagcaatc ... gcctttccagCAGTAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTA
EST: gi|208154342|gb|GD955395.1|GD955395
EST:     TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATT                         CAGTAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTA
genomic: TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATTgtaagcaatc ... gcctttccagCAGTAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTA
EST: gi|192324841|gb|FK015352.1|FK015352
EST:     TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATT                         ---TAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTA
genomic: TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATTgtaagcaatc ... gcctttccagCAGTAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTA
EST: gi|254331134|gb|GR843253.1|GR843253
EST:     TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATT                         ---TAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTA
genomic: TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATTgtaagcaatc ... gcctttccagCAGTAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTA
EST: gi|213597190|gb|DB981582.1|DB981582
EST:     TGGCTCAGATT                         CAGTAGGGGGATCGTTCCAGGAAGTAAATAACAGCAAACAGAGGGTGGA-T
genomic: TGGCTCAGATTgtaagcaatc ... gcctttccagCAGTAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGT-TATT
EST: gi|5666923|gb|AI930959.1|AI930959
EST:     TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATT                         CAGTAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTA
genomic: TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATTgtaagcaatc ... gcctttccagCAGTAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTA
EST: gi|9984165|gb|BE658273.1|BE658273
EST:     TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATT                         CAGTAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTA
genomic: TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATTgtaagcaatc ... gcctttccagCAGTAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTA
EST: gi|120533133|gb|EH261266.1|EH261266
EST:     TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATT                         ---TAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTA
genomic: TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATTgtaagcaatc ... gcctttccagCAGTAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTA
EST: gi|254331133|gb|GR843252.1|GR843252
EST:     TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATT                         ---TAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTA
genomic: TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATTgtaagcaatc ... gcctttccagCAGTAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTA
EST: gi|120533498|gb|EH261631.1|EH261631
EST:     TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATT                         ---TAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTA
genomic: TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATTgtaagcaatc ... gcctttccagCAGTAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTA